Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 126699192

GI number: 126699192

Start: 1841525

End: 1842475

Strand: Direct

Name: rbsC [H]

Synonym: CD1588

Alternate gene names: 126699192

Gene position: 1841525-1842475 (Clockwise)

Preceding gene: 126699191

Following gene: 126699193

Centisome position: 42.92

GC content: 31.97

Gene sequence:

>951_bases
ATGAAGAAAGCTTTTGAGAAGTTAAATTTAAGAGATTATGGAGTATTATTAGGTTTTTTAGCTTTATGTATAGCTATAAG
TATTGCAACTCCATCATTTTTAGGTAAACAAAATATACTTAATCTTTTACGACAATCTTCTATAATTGGAATAATTTCAG
CAGGTATGACTTTTGTTATAATATCTGGAAACTTTGATATATCAGTTGGAGCAGTAGCAGCTCTTGCAGGTGCTATAACA
ATGAAATTTGCGACTGGTGGAACCAATTTGTTTGCATCCATGTTCTTAGGTGTAGCGATTTGTGCAGTAATAGGATTAAT
CAATGGTATAGTAGTTGCAAAGATAAATGTACCATCATTAATAGCTACTATGGCTATGGTCACTATTGTAAGAGGATTGC
TGTTGATGCTTACAGGAGGATATCCAATTACTGAAAATATACCAATACTTGATTACATTGGAAATGGATATTTGTTTAAT
ATACCAATACCAGTAGTAATTTTCTTTATAGTGGTGTTAGTTTCATTTATTGTACTTAATAAAACTAAGTTTGGTAGATA
TGTTTATTCTGTAGGAGGGAATCAAGAAGCAAGTAAACTTAATGGTATAAATGTAGATTCTCACAAAGTGAAAGTGTTTA
TTATTAATGCTGTACTTGCAGGAATAGCTGGAATCGTACTAACAGGAAGACTTGGGACTGCAACTGCGATTGCAGGTGAA
GGATATGATATGGATGCAATTGCATCTGTAGTAATAGGAGGTACATCAGTGGCAGGAGGTTCTGGTTCTGTACTTAAAAC
TGTTATAGGAGTATTACTTATGAGTGTTATAAACAACAGTTTTAATCTTCTTGGAATAGATGTATATTTCCAGTACATAT
TTAAAGGATTAATAATTTTAGCAGCAGTTGGATTTGATTCTTATAGCAAGAAAAAACTTGCTTCAAGATAA

Upstream 100 bases:

>100_bases
GAAGGTTCTATTGTAGATGATTTAAAAAATGAGAATATACAGGTTCAAGATATAATGAACAGTATATTTAATGTATAAAA
AATGAAAATGGAGGACTGAG

Downstream 100 bases:

>100_bases
AAAATAAGGGGGATTTTTTTATGAAAAAATTAATGAAACATTTAGCATTGTTGCTATCACTTGTTATGATATTTGGTTTA
GTTGGTTGTTCAAATGGTGG

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKKAFEKLNLRDYGVLLGFLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAIT
MKFATGGTNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLTGGYPITENIPILDYIGNGYLFN
IPIPVVIFFIVVLVSFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGE
GYDMDAIASVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFDSYSKKKLASR

Sequences:

>Translated_316_residues
MKKAFEKLNLRDYGVLLGFLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAIT
MKFATGGTNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLTGGYPITENIPILDYIGNGYLFN
IPIPVVIFFIVVLVSFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGE
GYDMDAIASVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFDSYSKKKLASR
>Mature_316_residues
MKKAFEKLNLRDYGVLLGFLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAIT
MKFATGGTNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLTGGYPITENIPILDYIGNGYLFN
IPIPVVIFFIVVLVSFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGE
GYDMDAIASVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFDSYSKKKLASR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=315, Percent_Identity=39.0476190476191, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1788896, Length=306, Percent_Identity=35.2941176470588, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI145693152, Length=315, Percent_Identity=35.5555555555556, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1790524, Length=315, Percent_Identity=36.1904761904762, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI1789992, Length=133, Percent_Identity=45.8646616541353, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI87082395, Length=263, Percent_Identity=34.6007604562738, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788471, Length=332, Percent_Identity=34.0361445783133, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=29.4117647058824, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI145693214, Length=253, Percent_Identity=32.4110671936759, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1787794, Length=286, Percent_Identity=27.6223776223776, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33058; Mature: 33058

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAFEKLNLRDYGVLLGFLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVI
CCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHEEECCEEEEE
ISGNFDISVGAVAALAGAITMKFATGGTNLFASMFLGVAICAVIGLINGIVVAKINVPSL
EECCCCCHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHH
IATMAMVTIVRGLLLMLTGGYPITENIPILDYIGNGYLFNIPIPVVIFFIVVLVSFIVLN
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEECCHHHHHHHHHHHHHHHHHC
KTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGE
CCHHCCEEEECCCCCCHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCEEECCC
GYDMDAIASVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIIL
CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHH
AAVGFDSYSKKKLASR
HHHCCCCHHHHHHCCC
>Mature Secondary Structure
MKKAFEKLNLRDYGVLLGFLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVI
CCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHEEECCEEEEE
ISGNFDISVGAVAALAGAITMKFATGGTNLFASMFLGVAICAVIGLINGIVVAKINVPSL
EECCCCCHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHH
IATMAMVTIVRGLLLMLTGGYPITENIPILDYIGNGYLFNIPIPVVIFFIVVLVSFIVLN
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEECCHHHHHHHHHHHHHHHHHC
KTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGE
CCHHCCEEEECCCCCCHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCEEECCC
GYDMDAIASVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIIL
CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHH
AAVGFDSYSKKKLASR
HHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]