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The map label for this gene is rbsB [H]

Identifier: 126699193

GI number: 126699193

Start: 1842496

End: 1843458

Strand: Direct

Name: rbsB [H]

Synonym: CD1589

Alternate gene names: 126699193

Gene position: 1842496-1843458 (Clockwise)

Preceding gene: 126699192

Following gene: 126699194

Centisome position: 42.95

GC content: 31.98

Gene sequence:

>963_bases
ATGAAAAAATTAATGAAACATTTAGCATTGTTGCTATCACTTGTTATGATATTTGGTTTAGTTGGTTGTTCAAATGGTGG
TGACAAAGAAAAAAATGGAGAAAAGAAAATAGCAGTATTACTACCAGGTTCAACAGGTTACTTTGTAGCAACTAAACAAG
GTATAGATGCAAAATCTAAAGAATTAGGTGTAAGCGTTGAATATGCAGATGCTCAATGGGATGCTAGTAAACAATTATCA
CAAGCTGAAGATTTTATGGCTAAAGGGGTAGACATGATTGCATTATGTGGAGTTGATTCTGCTGTAAGTGAGAGAATAGT
TAAAGCTGCTAATGATTCAGACGTTCCTATAGTAGCATTTACAAATTCTATAGGAAGTAACCCAACTGGAGAATTTAAAG
GTTTAGTTACATATATAGGACAAAATGAGGAAGAAACAGGAGCATTAACTGGAAAAATTGCTAAAAACTTATTAGGAGAA
ACTGGTGGGAAAGCTGTATTAATAGAAGGAGTACCAGGAACTACTCCACAAGTATTAAGAAAAAAAGGTCTTGAAAAAGA
ATTAAAAGATAGTAATATAGAAATAGTTTATAATCAAACTTCAAATTGGGAGAAAGAGCAAGCTTTAAAAGTAACAGAAG
ATTTAATTCAAAAGAAAACTGATTTTAATGTTATAATATGTCAAGATGATAATTCTGCTACAGGTGCAGGTCAAGCTTTA
AAAGATGCTGGTCTTAAGGATAAAGTTAAAGTCATAGGTTTGGGTGGAAGTAAAGATGGATTAAAAGCTATAACTGATGG
GTTAATAGATGGTACAACTTATATGTCTGCTGTAGAAGAAGGTGGATTAGTCATAGAAAAGGCATCTAAATTCCTTAAAG
GTGAAAAAATAGAACCTGTTACACAAATTAAACAAGTTGAAGTTAACAAAGATAATATTTCAGAGTTCAAGGGTGAATGG
TAA

Upstream 100 bases:

>100_bases
AGTACATATTTAAAGGATTAATAATTTTAGCAGCAGTTGGATTTGATTCTTATAGCAAGAAAAAACTTGCTTCAAGATAA
AAAATAAGGGGGATTTTTTT

Downstream 100 bases:

>100_bases
ATTGTCATAGATAATAAATAAGATTTTTAGAGTTACTTTAGAAACTATATAAAGTAACTCTTTTTTTAATTTAATTTAGT
GATAAATTATTGAATAGTAT

Product: ribose ABC transporter substrate-binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MKKLMKHLALLLSLVMIFGLVGCSNGGDKEKNGEKKIAVLLPGSTGYFVATKQGIDAKSKELGVSVEYADAQWDASKQLS
QAEDFMAKGVDMIALCGVDSAVSERIVKAANDSDVPIVAFTNSIGSNPTGEFKGLVTYIGQNEEETGALTGKIAKNLLGE
TGGKAVLIEGVPGTTPQVLRKKGLEKELKDSNIEIVYNQTSNWEKEQALKVTEDLIQKKTDFNVIICQDDNSATGAGQAL
KDAGLKDKVKVIGLGGSKDGLKAITDGLIDGTTYMSAVEEGGLVIEKASKFLKGEKIEPVTQIKQVEVNKDNISEFKGEW

Sequences:

>Translated_320_residues
MKKLMKHLALLLSLVMIFGLVGCSNGGDKEKNGEKKIAVLLPGSTGYFVATKQGIDAKSKELGVSVEYADAQWDASKQLS
QAEDFMAKGVDMIALCGVDSAVSERIVKAANDSDVPIVAFTNSIGSNPTGEFKGLVTYIGQNEEETGALTGKIAKNLLGE
TGGKAVLIEGVPGTTPQVLRKKGLEKELKDSNIEIVYNQTSNWEKEQALKVTEDLIQKKTDFNVIICQDDNSATGAGQAL
KDAGLKDKVKVIGLGGSKDGLKAITDGLIDGTTYMSAVEEGGLVIEKASKFLKGEKIEPVTQIKQVEVNKDNISEFKGEW
>Mature_320_residues
MKKLMKHLALLLSLVMIFGLVGCSNGGDKEKNGEKKIAVLLPGSTGYFVATKQGIDAKSKELGVSVEYADAQWDASKQLS
QAEDFMAKGVDMIALCGVDSAVSERIVKAANDSDVPIVAFTNSIGSNPTGEFKGLVTYIGQNEEETGALTGKIAKNLLGE
TGGKAVLIEGVPGTTPQVLRKKGLEKELKDSNIEIVYNQTSNWEKEQALKVTEDLIQKKTDFNVIICQDDNSATGAGQAL
KDAGLKDKVKVIGLGGSKDGLKAITDGLIDGTTYMSAVEEGGLVIEKASKFLKGEKIEPVTQIKQVEVNKDNISEFKGEW

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=297, Percent_Identity=27.6094276094276, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790674, Length=235, Percent_Identity=27.2340425531915, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790526, Length=243, Percent_Identity=27.1604938271605, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788473, Length=336, Percent_Identity=27.0833333333333, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789990, Length=276, Percent_Identity=28.6231884057971, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788898, Length=259, Percent_Identity=25.0965250965251, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 34145; Mature: 34145

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00687 ALDEHYDE_DEHYDR_GLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLMKHLALLLSLVMIFGLVGCSNGGDKEKNGEKKIAVLLPGSTGYFVATKQGIDAKSK
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCHH
ELGVSVEYADAQWDASKQLSQAEDFMAKGVDMIALCGVDSAVSERIVKAANDSDVPIVAF
HHCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEE
TNSIGSNPTGEFKGLVTYIGQNEEETGALTGKIAKNLLGETGGKAVLIEGVPGTTPQVLR
ECCCCCCCCCCHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH
KKGLEKELKDSNIEIVYNQTSNWEKEQALKVTEDLIQKKTDFNVIICQDDNSATGAGQAL
HCCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHH
KDAGLKDKVKVIGLGGSKDGLKAITDGLIDGTTYMSAVEEGGLVIEKASKFLKGEKIEPV
HHCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCCEEHHHHHHHHCCCCCCHH
TQIKQVEVNKDNISEFKGEW
HHHHEEECCCHHHHHHCCCC
>Mature Secondary Structure
MKKLMKHLALLLSLVMIFGLVGCSNGGDKEKNGEKKIAVLLPGSTGYFVATKQGIDAKSK
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCHH
ELGVSVEYADAQWDASKQLSQAEDFMAKGVDMIALCGVDSAVSERIVKAANDSDVPIVAF
HHCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEE
TNSIGSNPTGEFKGLVTYIGQNEEETGALTGKIAKNLLGETGGKAVLIEGVPGTTPQVLR
ECCCCCCCCCCHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH
KKGLEKELKDSNIEIVYNQTSNWEKEQALKVTEDLIQKKTDFNVIICQDDNSATGAGQAL
HCCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHH
KDAGLKDKVKVIGLGGSKDGLKAITDGLIDGTTYMSAVEEGGLVIEKASKFLKGEKIEPV
HHCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCCEEHHHHHHHHCCCCCCHH
TQIKQVEVNKDNISEFKGEW
HHHHEEECCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]