| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699113
Identifier: 126699113
GI number: 126699113
Start: 1746150
End: 1746719
Strand: Direct
Name: 126699113
Synonym: CD1509
Alternate gene names: NA
Gene position: 1746150-1746719 (Clockwise)
Preceding gene: 126699112
Following gene: 126699119
Centisome position: 40.7
GC content: 25.26
Gene sequence:
>570_bases ATGAAGAAATTTATTATATGTATTATAATGTTTGCAATATCAGTACTGGTGTTAGCTGGTTGTACTAATGATAATAAGAT AAAAAATGAAGTGGATAGTATGTTTAATTCAATAAAAACACAAGATGCAGATACTGTTGATAAGTATTTCCCAAAATCAG GGTTAGGTAATCTTATATACGAAGATAAAGAAGGATTTAAAATGTATTCTAAAAATATGACTTGGGAAATTTCAGATATA AAGAATAATAAGGATAAAGTGACTGTAGATTTAAAAATTAACAATACTGATATGGTTTCTATTTTAAAAAAGAATCCTCC TAAACTAGGAGAAATGATGCCAAATCCAACTATGAAAGATATTGATTCTGCAAAGAAAAAAGAATTTAATATTACATTAG AGCTTGTTAAATCTGGTGATAATTATGTTTGTAAAGTTAATCAAGAATCTGCAATGAAATTATTAAATGTGATTACAGGA GGTGGTATAGATTATCTAGCTGACTATAATAAAGATTATTATAAACAGCTTGATGAAGAACAAAAAAATTATGAAAATAA AAATAGTTAG
Upstream 100 bases:
>100_bases TGTATAAAAGTTTGTCCACAAAATGCAATTACTACAACTTTTTCAAAAGATAAAAAAGAGAATAATATTTGTGCAAAAAA GTATAGGGGGATATAATTTA
Downstream 100 bases:
>100_bases TAATATATATGAAAATCGGAGCAATTAATAATATAGAAACACAAATTAAAAGAATATAAAAGTGGTAGAATGAAAGTCTT GTAGAAGCTTTTATTCTACC
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MKKFIICIIMFAISVLVLAGCTNDNKIKNEVDSMFNSIKTQDADTVDKYFPKSGLGNLIYEDKEGFKMYSKNMTWEISDI KNNKDKVTVDLKINNTDMVSILKKNPPKLGEMMPNPTMKDIDSAKKKEFNITLELVKSGDNYVCKVNQESAMKLLNVITG GGIDYLADYNKDYYKQLDEEQKNYENKNS
Sequences:
>Translated_189_residues MKKFIICIIMFAISVLVLAGCTNDNKIKNEVDSMFNSIKTQDADTVDKYFPKSGLGNLIYEDKEGFKMYSKNMTWEISDI KNNKDKVTVDLKINNTDMVSILKKNPPKLGEMMPNPTMKDIDSAKKKEFNITLELVKSGDNYVCKVNQESAMKLLNVITG GGIDYLADYNKDYYKQLDEEQKNYENKNS >Mature_189_residues MKKFIICIIMFAISVLVLAGCTNDNKIKNEVDSMFNSIKTQDADTVDKYFPKSGLGNLIYEDKEGFKMYSKNMTWEISDI KNNKDKVTVDLKINNTDMVSILKKNPPKLGEMMPNPTMKDIDSAKKKEFNITLELVKSGDNYVCKVNQESAMKLLNVITG GGIDYLADYNKDYYKQLDEEQKNYENKNS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21603; Mature: 21603
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKFIICIIMFAISVLVLAGCTNDNKIKNEVDSMFNSIKTQDADTVDKYFPKSGLGNLIY CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEE EDKEGFKMYSKNMTWEISDIKNNKDKVTVDLKINNTDMVSILKKNPPKLGEMMPNPTMKD ECCCCCEEHHCCCCEEEECCCCCCCEEEEEEEECCCHHHHHHHCCCCHHHHCCCCCCHHH IDSAKKKEFNITLELVKSGDNYVCKVNQESAMKLLNVITGGGIDYLADYNKDYYKQLDEE HHHHHHHHHEEEEEEEECCCCEEEEECHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHH QKNYENKNS HHCCCCCCC >Mature Secondary Structure MKKFIICIIMFAISVLVLAGCTNDNKIKNEVDSMFNSIKTQDADTVDKYFPKSGLGNLIY CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEE EDKEGFKMYSKNMTWEISDIKNNKDKVTVDLKINNTDMVSILKKNPPKLGEMMPNPTMKD ECCCCCEEHHCCCCEEEECCCCCCCEEEEEEEECCCHHHHHHHCCCCHHHHCCCCCCHHH IDSAKKKEFNITLELVKSGDNYVCKVNQESAMKLLNVITGGGIDYLADYNKDYYKQLDEE HHHHHHHHHEEEEEEEECCCCEEEEECHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHH QKNYENKNS HHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA