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The map label for this gene is yciR [C]

Identifier: 126699119

GI number: 126699119

Start: 1753526

End: 1755619

Strand: Direct

Name: yciR [C]

Synonym: CD1515

Alternate gene names: 126699119

Gene position: 1753526-1755619 (Clockwise)

Preceding gene: 126699113

Following gene: 126699120

Centisome position: 40.87

GC content: 27.55

Gene sequence:

>2094_bases
ATGAACAAACATAATTTTGAAGTTATATTAAATCAACTACAGATTAATATATATGTTACAAATATTCATACTAATGAAAT
TATTTTTATGAACAAAAAAATGAAAGAAGAATATAATATTTTAGATCCAGAAGGAAAAGTTTGTTGGCAAGTATTATATC
CTGAAAAAAATTCTACTTGTAGTTTTTGTAAAGTTTTAGAATTATTAAAGAATGATAAAAAAGGAGTATTAATAAAGTGG
TATGAAAAATGTAATAAGTTAAATCGTGTTTTTGAAAATTATGATAGTTTAATTACATGGCAAGATGGCACAGTTGTTCA
TATGCATCAATCAATAGATATTGCAAACTCAACAAGCTTAAATAAACCAATTAAGATTAATGAATTTCATGAAATATCAA
ATAATAAAGAAGAAAAAGGAGTTTTTAATTTTTCAAGAGACAATTTTGATTATAATTCTACATTGCTTTACGATGCTTTG
ATTAGAGGTACAGATGAATATATATACATTTGCAATATGAAAACAGGCGTATTTCGATATTCACCATCACAAGTTGAATT
ATTTGACTTACCAGGAGAAATTGTTAAAAATCCGCTTGTTTACTGGAAAAAAATTGTACATCCAGAAGACTGGAATCGTT
TTTATAAGTCAAACACTGAAATAGGTAAAAACCAGATGGATTATCATACAGTGGAATTTAGGGCTAAAAATCGTAGTGGA
GAATATATATGGTTAAGATGTAGAGGTCAACTAATGCGTGATGAATTTGGAGAACCAAGTATTTTTGCAGGAATAATGAC
GCAATTAGGTAAACAAAATAAGATTGATTCATTGACACAGTTACTGAATTATCATGAATTTATGAGTGTATTTGAAGATA
AAATTTCAAATCCTATGATTGAAAAATTATGCATAGTATTATTAGATATTGACGATTTTAAAAATGTTAATGAGATGTAT
GATAGGGATTTTGGAGATAATATAATAAAAACACTAGCACAGTCTATACAATCTATTTTACCAGATAATGCTGAACTTTA
TAAACTTGATGGGGACGAAATGGGCATTCTTGTTGATAATGTTGAAGAAAATGAAATTCTAACTCTATATAATCAAATAC
AGAATATGATTATACACCTTCAACTATGGAGAAAATATGGATTAAATATAACAATTTCTGCTGGTTGTGTAATATATCCA
AAACATGGAGATACAGTAAAAGAACTTTATAAGTGTGCTAGTTACTCTTTACAATATGCGAAAGAGCATGGTAAAAACAG
GCTTGTTTTTTTCTCCCAAGAAATATTAAAAAATAAAATGTATTCATTAGAAATGATGCGGGATTTAAAGGCATCAATTA
ATGATGATTTTAGGGGGTTTAGTCTTCGATTCCAGCCACAAGTAGATACAGAAAGTCATAAAATAATAGGTGTAGAAGTT
CTTTTAAGGTGGACTAATGACAAATGCAAAGCAATTTCTCCTTTGGAATTTATTCCAATATTAGAAGAAAATGATATGAT
AAATATTGTAGGGGCTTGGGTGCTTCGAATGGCATTACGTACTTTTAGGAAATGGATTGATTACTATCCTTTTTTTAAAG
TGAGTGTAAACGTTTCAGCTGTTCAAATATTAGAAGACACATTTATTGAAGATATAGTAAAAATTATAGATGATGAAAAT
TTTCCTTATCAAAATCTTGTTTTAGAATTGACAGAAAGTCATACAGTACAAAATATGAGTATTTTACAGTTTAAATTTAA
GGCTTTACAAGATTTAGGAATTTATATTGCTATGGATGATTTTGGTACGGGATACTCGTCTCTAGAAGTTTTAAAATTTT
CTCCAATAGATATAGTGAAAATTGATAGAGTATTTGTTAAAGATATATTAAAGAGTAAGTTTGATGCTACATTTATACAT
TTTATTGTTGCAATTTGTCATGATGTAGGAATAAAAGTATGTTTAGAAGGTGTAGAAACACAAGAAGAGTATGATTTAGT
TAAACAAATAAAGCCAGATTACATACAAGGATATTTATTTGGAAAACCGCAGACAGCAACAGAAATCTTTGACCTTTTAA
AGCTAGATAATTAA

Upstream 100 bases:

>100_bases
GGTATTTAGTGTATATGTATAAGTTATAAGTAAATCTTCTAAAAAGAATAATTTTAACAATGTTGTTATAAAGAGCAGTA
ACTATGGAGGAGATAAGTAT

Downstream 100 bases:

>100_bases
TTCTAATTTATCAATAATATCACTGAAAAGCTTTAAAATCAAAAATACATTAAATTATTATATTGAAGATATATCAATTA
TAAATTGCAATATAAGAAAA

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 697; Mature: 697

Protein sequence:

>697_residues
MNKHNFEVILNQLQINIYVTNIHTNEIIFMNKKMKEEYNILDPEGKVCWQVLYPEKNSTCSFCKVLELLKNDKKGVLIKW
YEKCNKLNRVFENYDSLITWQDGTVVHMHQSIDIANSTSLNKPIKINEFHEISNNKEEKGVFNFSRDNFDYNSTLLYDAL
IRGTDEYIYICNMKTGVFRYSPSQVELFDLPGEIVKNPLVYWKKIVHPEDWNRFYKSNTEIGKNQMDYHTVEFRAKNRSG
EYIWLRCRGQLMRDEFGEPSIFAGIMTQLGKQNKIDSLTQLLNYHEFMSVFEDKISNPMIEKLCIVLLDIDDFKNVNEMY
DRDFGDNIIKTLAQSIQSILPDNAELYKLDGDEMGILVDNVEENEILTLYNQIQNMIIHLQLWRKYGLNITISAGCVIYP
KHGDTVKELYKCASYSLQYAKEHGKNRLVFFSQEILKNKMYSLEMMRDLKASINDDFRGFSLRFQPQVDTESHKIIGVEV
LLRWTNDKCKAISPLEFIPILEENDMINIVGAWVLRMALRTFRKWIDYYPFFKVSVNVSAVQILEDTFIEDIVKIIDDEN
FPYQNLVLELTESHTVQNMSILQFKFKALQDLGIYIAMDDFGTGYSSLEVLKFSPIDIVKIDRVFVKDILKSKFDATFIH
FIVAICHDVGIKVCLEGVETQEEYDLVKQIKPDYIQGYLFGKPQTATEIFDLLKLDN

Sequences:

>Translated_697_residues
MNKHNFEVILNQLQINIYVTNIHTNEIIFMNKKMKEEYNILDPEGKVCWQVLYPEKNSTCSFCKVLELLKNDKKGVLIKW
YEKCNKLNRVFENYDSLITWQDGTVVHMHQSIDIANSTSLNKPIKINEFHEISNNKEEKGVFNFSRDNFDYNSTLLYDAL
IRGTDEYIYICNMKTGVFRYSPSQVELFDLPGEIVKNPLVYWKKIVHPEDWNRFYKSNTEIGKNQMDYHTVEFRAKNRSG
EYIWLRCRGQLMRDEFGEPSIFAGIMTQLGKQNKIDSLTQLLNYHEFMSVFEDKISNPMIEKLCIVLLDIDDFKNVNEMY
DRDFGDNIIKTLAQSIQSILPDNAELYKLDGDEMGILVDNVEENEILTLYNQIQNMIIHLQLWRKYGLNITISAGCVIYP
KHGDTVKELYKCASYSLQYAKEHGKNRLVFFSQEILKNKMYSLEMMRDLKASINDDFRGFSLRFQPQVDTESHKIIGVEV
LLRWTNDKCKAISPLEFIPILEENDMINIVGAWVLRMALRTFRKWIDYYPFFKVSVNVSAVQILEDTFIEDIVKIIDDEN
FPYQNLVLELTESHTVQNMSILQFKFKALQDLGIYIAMDDFGTGYSSLEVLKFSPIDIVKIDRVFVKDILKSKFDATFIH
FIVAICHDVGIKVCLEGVETQEEYDLVKQIKPDYIQGYLFGKPQTATEIFDLLKLDN
>Mature_697_residues
MNKHNFEVILNQLQINIYVTNIHTNEIIFMNKKMKEEYNILDPEGKVCWQVLYPEKNSTCSFCKVLELLKNDKKGVLIKW
YEKCNKLNRVFENYDSLITWQDGTVVHMHQSIDIANSTSLNKPIKINEFHEISNNKEEKGVFNFSRDNFDYNSTLLYDAL
IRGTDEYIYICNMKTGVFRYSPSQVELFDLPGEIVKNPLVYWKKIVHPEDWNRFYKSNTEIGKNQMDYHTVEFRAKNRSG
EYIWLRCRGQLMRDEFGEPSIFAGIMTQLGKQNKIDSLTQLLNYHEFMSVFEDKISNPMIEKLCIVLLDIDDFKNVNEMY
DRDFGDNIIKTLAQSIQSILPDNAELYKLDGDEMGILVDNVEENEILTLYNQIQNMIIHLQLWRKYGLNITISAGCVIYP
KHGDTVKELYKCASYSLQYAKEHGKNRLVFFSQEILKNKMYSLEMMRDLKASINDDFRGFSLRFQPQVDTESHKIIGVEV
LLRWTNDKCKAISPLEFIPILEENDMINIVGAWVLRMALRTFRKWIDYYPFFKVSVNVSAVQILEDTFIEDIVKIIDDEN
FPYQNLVLELTESHTVQNMSILQFKFKALQDLGIYIAMDDFGTGYSSLEVLKFSPIDIVKIDRVFVKDILKSKFDATFIH
FIVAICHDVGIKVCLEGVETQEEYDLVKQIKPDYIQGYLFGKPQTATEIFDLLKLDN

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=497, Percent_Identity=28.9738430583501, Blast_Score=213, Evalue=3e-56,
Organism=Escherichia coli, GI226510982, Length=420, Percent_Identity=25.952380952381, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI87081921, Length=425, Percent_Identity=25.1764705882353, Blast_Score=149, Evalue=8e-37,
Organism=Escherichia coli, GI87082096, Length=418, Percent_Identity=25.8373205741627, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI1790496, Length=221, Percent_Identity=31.6742081447964, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=372, Percent_Identity=26.8817204301075, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI87081980, Length=227, Percent_Identity=32.5991189427313, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87081845, Length=231, Percent_Identity=31.6017316017316, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1786507, Length=225, Percent_Identity=30.2222222222222, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI1788502, Length=225, Percent_Identity=28.8888888888889, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1787055, Length=298, Percent_Identity=25.503355704698, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87081743, Length=252, Percent_Identity=26.5873015873016, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1787262, Length=158, Percent_Identity=29.746835443038, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=26.5822784810127, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1787410, Length=239, Percent_Identity=26.3598326359833, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 81618; Mature: 81618

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKHNFEVILNQLQINIYVTNIHTNEIIFMNKKMKEEYNILDPEGKVCWQVLYPEKNSTC
CCCCCHHHEEEEEEEEEEEEEEECCEEEEEECHHHHHCCCCCCCCCEEEEEEECCCCCCH
SFCKVLELLKNDKKGVLIKWYEKCNKLNRVFENYDSLITWQDGTVVHMHQSIDIANSTSL
HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCCCCCC
NKPIKINEFHEISNNKEEKGVFNFSRDNFDYNSTLLYDALIRGTDEYIYICNMKTGVFRY
CCCEEECCHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCEEEE
SPSQVELFDLPGEIVKNPLVYWKKIVHPEDWNRFYKSNTEIGKNQMDYHTVEFRAKNRSG
CCCCEEEEECCHHHHHCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEEEEECCCCC
EYIWLRCRGQLMRDEFGEPSIFAGIMTQLGKQNKIDSLTQLLNYHEFMSVFEDKISNPMI
CEEEEEECCCHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
EKLCIVLLDIDDFKNVNEMYDRDFGDNIIKTLAQSIQSILPDNAELYKLDGDEMGILVDN
HHHHEEEEECHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEC
VEENEILTLYNQIQNMIIHLQLWRKYGLNITISAGCVIYPKHGDTVKELYKCASYSLQYA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCHHHHHHHHHHHHHHHH
KEHGKNRLVFFSQEILKNKMYSLEMMRDLKASINDDFRGFSLRFQPQVDTESHKIIGVEV
HHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEE
LLRWTNDKCKAISPLEFIPILEENDMINIVGAWVLRMALRTFRKWIDYYPFFKVSVNVSA
EEEECCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHH
VQILEDTFIEDIVKIIDDENFPYQNLVLELTESHTVQNMSILQFKFKALQDLGIYIAMDD
HHHHHHHHHHHHHHHHCCCCCCHHHHHHEECCCCCCCCHHHHHHHHHHHHHCCEEEEEEC
FGTGYSSLEVLKFSPIDIVKIDRVFVKDILKSKFDATFIHFIVAICHDVGIKVCLEGVET
CCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHCCCC
QEEYDLVKQIKPDYIQGYLFGKPQTATEIFDLLKLDN
HHHHHHHHHCCCCHHEEEEECCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNKHNFEVILNQLQINIYVTNIHTNEIIFMNKKMKEEYNILDPEGKVCWQVLYPEKNSTC
CCCCCHHHEEEEEEEEEEEEEEECCEEEEEECHHHHHCCCCCCCCCEEEEEEECCCCCCH
SFCKVLELLKNDKKGVLIKWYEKCNKLNRVFENYDSLITWQDGTVVHMHQSIDIANSTSL
HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCCCCCC
NKPIKINEFHEISNNKEEKGVFNFSRDNFDYNSTLLYDALIRGTDEYIYICNMKTGVFRY
CCCEEECCHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCEEEE
SPSQVELFDLPGEIVKNPLVYWKKIVHPEDWNRFYKSNTEIGKNQMDYHTVEFRAKNRSG
CCCCEEEEECCHHHHHCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEEEEECCCCC
EYIWLRCRGQLMRDEFGEPSIFAGIMTQLGKQNKIDSLTQLLNYHEFMSVFEDKISNPMI
CEEEEEECCCHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
EKLCIVLLDIDDFKNVNEMYDRDFGDNIIKTLAQSIQSILPDNAELYKLDGDEMGILVDN
HHHHEEEEECHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEC
VEENEILTLYNQIQNMIIHLQLWRKYGLNITISAGCVIYPKHGDTVKELYKCASYSLQYA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCHHHHHHHHHHHHHHHH
KEHGKNRLVFFSQEILKNKMYSLEMMRDLKASINDDFRGFSLRFQPQVDTESHKIIGVEV
HHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEE
LLRWTNDKCKAISPLEFIPILEENDMINIVGAWVLRMALRTFRKWIDYYPFFKVSVNVSA
EEEECCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHH
VQILEDTFIEDIVKIIDDENFPYQNLVLELTESHTVQNMSILQFKFKALQDLGIYIAMDD
HHHHHHHHHHHHHHHHCCCCCCHHHHHHEECCCCCCCCHHHHHHHHHHHHHCCEEEEEEC
FGTGYSSLEVLKFSPIDIVKIDRVFVKDILKSKFDATFIHFIVAICHDVGIKVCLEGVET
CCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHCCCC
QEEYDLVKQIKPDYIQGYLFGKPQTATEIFDLLKLDN
HHHHHHHHHCCCCHHEEEEECCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]