| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is mviN [H]
Identifier: 126699103
GI number: 126699103
Start: 1736355
End: 1736753
Strand: Direct
Name: mviN [H]
Synonym: CD1499
Alternate gene names: 126699103
Gene position: 1736355-1736753 (Clockwise)
Preceding gene: 126699102
Following gene: 126699104
Centisome position: 40.47
GC content: 27.82
Gene sequence:
>3427_bases ATGAGCAAGGTAGCTAAAGCAACTTTTTATTTGATGATAGTTACTATAATCTCTAAGATTCTTGGAATGGGTAGAGAATT AGTATTATCATCAATTTATGGTACAGGCTTATATACAGAGAGTTATTTAACAGCTATGAATATACCAAATATTATATTTG CAGCAATAGGTACTGCTATAGTTACTACTTTTATTCCAATGTATCAAGATATAAGTAGTAAACAAGGTGAAAAGCAAGCA CTAAAGTTTTTAAACAATGTTTTAAATATAATAGTTGGTATATGCATAGTTGTAGCTATATTAGGAGTTATTTTCTCAAA GCAACTTGTAAGTATATTTGCTATAGGATTTGAAGGAGAGAGGTTTTTACTTACCGTAAAATTTACTAAAATATTGATTA AAAAATAGCTACGCACACTCGTGACTTTAGTCATGAGTTAGTAGCTAAAATAGTCAGCATATAGGGAAACCTATATGTAG AGATAGGATAGAACCTATCCAATACTACTTGAATTGCTGGAAACCCCTAAAGCTAATCAAACTAAAACATAAGGATGAAA TAAACCTAAGTGTGAAAGTTACGAAAGTAGAAAAAATTGGTTAGATGGTATAAGGTTAAATCCTAAGTACTTTAAAATGG GCAATCAGCAGGTAAACTCCGAATAGGAGAAACTTCAACGACTATTCCTCTTGAGGGAAGTACACTACAAGCTATTGGTA GTGGAAGTGGGTAGACCTTAACGGATAATGCTGAAGGATAAGATATAGTCTGTGCTTACATGAAAGTGTAAGAAGTTCAT AAGAGAACTGCATAGGTAGTAGCGAACTTATGTGAACGACAACCTCAAAAATGATAAAAGTTAAGACTTACGGTTCTTAA ATATGTTATTTAAAATTAAATATAAAACCTTCTAAATAATTGTTTTAAATAATTACATTTGTTAATATTATGATAGGTGA TTAATAAATTGTTCACCACAGCATTATATAATATATTAAATATTAAAATTATTAAAAAGTGTATCAAAAAACAATTAAAG TGAGGTGATAGCAGTGAAAAAAGCTTATAAGTTTAGAATATATCCTAATAAAAAACAGCAAGAGTTAATTAACAAAACTT TTGGATGTTGTAGGTTTGTATATAATAAATATCTTGCTAAAAGAATAGATGTTTATAAAAACGATAAAGAAACTTTTACT TATAAACAGTGTAGTTCTGATTTGACCAATTTAAAAAAAGAATTAAATTGGCTTAAAGAACCTGATAAATTTTCACTACA AAACGCCTTAAAAGATTTAGATAATGCATATAAAAAATTCTTTAAAGAAAAGGCAGGATTTCCTAAATTTAAATCAAAGA AAATTAATAGATTTTCATATAAAACTAACTTTACAAATGGAAACATTATGTATTGTGGTCAACATATAAAACTACCTAAA CTTGGTATGGTTAAGGTAAGGGATAAACAAGTACCTAAAGGGAGAATACTTAATGCTACTATATCTAAAGAACCAAGTGG TAGATATTATGTATCATTATGCTGTACTGATGTAGATATTGAAGTATTTGAAAATACTAATAATCATATAGGTTTAGATT TAGGAATTAAAGAATTTTGTATCTCAAGTTGTGGAGAATTTATAGAAAATCCTAAGTATCTTAAGAAGTCATTAAACAAA CTTGCTAAATTACAAAGAGAATTATCGAGAAAAACAATCGGTAGTTTAAATAGAAATAAAACAAGATTAAAAGTTGCAAG ACTTCAAGAACATATAGCTAATCAAAGAAATGATTTTCTACAAAAACTATCTACTAAATTAATAAAAGAGAACGATATTA TTTGCATAGAAGATTTACAAGTAAAGAATATGATTAGAAATCGTAAACTATCTCGCTTAATTTCTGATGTATCATGGTCA GAGTTTATTCGTCAATTAGAATACAAGGCTAATTGGCATGGTAGACAAATTGTAAAGGTAGGTAAATTCTTTGCAAGTTC ACAAATATGTAATAAATGTGGGTATAAAAACGAGGAAGTGAAGGACTTAAATATAAGAGAATGGATTTGTCCTAGTTGTA ATGAAACTCACGATAGAGATATAAATGCAAGTAGAAATATATTAAAAGAAGGATTAAGATTAATAACGATTCAAAATAAA TAACTTATGTAAGAACCGTAGGAACTACGGGGATAGCCTGTGGAGAATTAGTAAGACATATTTTAGTATGCAAAATTCTA TGAAGCAGGAACCCTGTGACTTTAGTCATGGGAGGTTCAGAACAGGAATAATATTCATAGGTATTACAAGTGTTATGTCA GCATTTTTACAAATTAAAGAGAACTTTATTGTAGTTGGATTTGGAAGTATACCCTATAATATAGTAATAATTATTTCAAT AATGTTAAGTACCATATTTGGACCATACATACTTCCAATTGGTGCTGTGGTTGCTATGGTAGTTCAACTGCTCTTTTACA TGTTTTTTGTTAAAAAAACGAACTACAAATACTTATACTACTTAAACTTTAAAGATGATAGCCTTATTAAATTACTAGCA TTACTTTCACCAGTATTTATAGGTGTTGCTGTTAATCAAGTGAACTCATTGGTAGATACAACTTTAGCCTCAACATTAGT TAAAGGAAGCATTCCAGCACTTACTTATGCAGATAGATTAAATGGTTTTGTTACAGGAACATTTACAGCTTCAATAGTAT CTGTTATGTATCCTATGTTATCTAAGTTAAGTGCAGAAAATAATCAAAAGAAGTTTACTAGTTCAGTTAAATCTAGTATA AATATGATAATAATTTCTATGATTCCTATTTCAGTTGCTTCTATTTTTTTTGCAACTCCTGTTGTTAGAATCATTTTTGA GAGAGGTGCTTTTGATGCGAGGGCAACCCAAATGACAGCAACTGCCTTAATTTTTTATGCAGTTGGTATGACTGCATTTG GATTAAGAGATATTTTGGGAAAGGTTTTTTATTCATTACAAGACACAAAAACACCTATGGTAAATGGGATTATATCTGTA GGGGTAAATATAGTATTGGACTTAGTTTTAATAAAACCAATGGCTCATGGTGGTCTTGCTCTTGCAACTAGTTCATCATC AATTGCATGTATATTGTTACTCTTCTTGAACCTAAAAAGAAAAGTTGGATATTTTGGACAAGATAAAATAATAAAAGCAA CTTTGAAATCGGTAGTTGCATCTTTAATTATGGGTGTTTTATCATACTTTACGTATAAATTTATATTTGGAATTTTGGGA GTAGGAACATTTAATGAGTTTGTATCACTAGCTATTTCAGTTATAGTTGGAGGTGGAATTTATACACTACTAATGACTAT TTTTAAAGTTGAAGAGGTTGATATGATACTGAATATTGCAAAAAGAAAATTGCATTTAAAAAAGTAA
Upstream 100 bases:
>100_bases TTTGATAGGGCTAAGCAAGGCAAATTAGTTGATAGAATTATATCTAATGAGCTAAATTTTACTTGATTAAAAAGAGGTAT GTTAGAAGTGGAGTGATAAA
Downstream 100 bases:
>100_bases TCTAATTATATTAATTATAAATTTAGGAGGATTTTATGAAACATATATTAAAAACAGTAGACCATACTATTTTAAAAGCT ACAACTACATGGGAAGATAT
Product: virulence factor MviN-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 133; Mature: 132
Protein sequence:
>514_residues MSKVAKATFYLMIVTIISKILGMGRELVLSSIYGTGLYTESYLTAMNIPNIIFAAIGTAIVTTFIPMYQDISSKQGEKQA LKFLNNVLNIIVGICIVVAILGVIFSKQLVSIFAIGFEGERFLLTVKFTKILITGIIFIGITSVMSAFLQIKENFIVVGF GSIPYNIVIIISIMLSTIFGPYILPIGAVVAMVVQLLFYMFFVKKTNYKYLYYLNFKDDSLIKLLALLSPVFIGVAVNQV NSLVDTTLASTLVKGSIPALTYADRLNGFVTGTFTASIVSVMYPMLSKLSAENNQKKFTSSVKSSINMIIISMIPISVAS IFFATPVVRIIFERGAFDARATQMTATALIFYAVGMTAFGLRDILGKVFYSLQDTKTPMVNGIISVGVNIVLDLVLIKPM AHGGLALATSSSSIACILLLFLNLKRKVGYFGQDKIIKATLKSVVASLIMGVLSYFTYKFIFGILGVGTFNEFVSLAISV IVGGGIYTLLMTIFKVEEVDMILNIAKRKLHLKK
Sequences:
>Translated_133_residues MSKVAKATFYLMIVTIISKILGMGRELVLSSIYGTGLYTESYLTAMNIPNIIFAAIGTAIVTTFIPMYQDISSKQGEKQA LKFLNNVLNIIVGICIVVAILGVIFSKQLVSIFAIGFEGERFLLTVKFTKILI >Mature_132_residues SKVAKATFYLMIVTIISKILGMGRELVLSSIYGTGLYTESYLTAMNIPNIIFAAIGTAIVTTFIPMYQDISSKQGEKQAL KFLNNVLNIIVGICIVVAILGVIFSKQLVSIFAIGFEGERFLLTVKFTKILI
Specific function: Unknown
COG id: COG0728
COG function: function code R; Uncharacterized membrane protein, putative virulence factor
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mviN family [H]
Homologues:
Organism=Escherichia coli, GI1787309, Length=123, Percent_Identity=29.2682926829268, Blast_Score=62, Evalue=1e-11,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004268 [H]
Pfam domain/function: PF03023 MVIN [H]
EC number: NA
Molecular weight: Translated: 14591; Mature: 14460
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKVAKATFYLMIVTIISKILGMGRELVLSSIYGTGLYTESYLTAMNIPNIIFAAIGTAI CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHH VTTFIPMYQDISSKQGEKQALKFLNNVLNIIVGICIVVAILGVIFSKQLVSIFAIGFEGE HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC RFLLTVKFTKILI EEEEEEHHHHHCC >Mature Secondary Structure SKVAKATFYLMIVTIISKILGMGRELVLSSIYGTGLYTESYLTAMNIPNIIFAAIGTAI CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHH VTTFIPMYQDISSKQGEKQALKFLNNVLNIIVGICIVVAILGVIFSKQLVSIFAIGFEGE HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC RFLLTVKFTKILI EEEEEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10993077 [H]