| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is pabB [H]
Identifier: 126699050
GI number: 126699050
Start: 1676723
End: 1678081
Strand: Direct
Name: pabB [H]
Synonym: CD1446
Alternate gene names: 126699050
Gene position: 1676723-1678081 (Clockwise)
Preceding gene: 126699049
Following gene: 126699051
Centisome position: 39.08
GC content: 29.73
Gene sequence:
>1359_bases ATGTGTAATATGATAAGAGAGATAAATACTAAATTAAATTCTTTTGAGATATTTACTATTTTTAGAAATGAACATGACAG TTTTATATTAGACAGTGCTATGGATAAAGAAAAATTGGGAAGATATTCTTTTATAAGTAGCCAACCATTTAAGGTATTAA AGTATAAAGATACTGATGAAAATCCTTTAGAAGTTTTAAAAGAAGAACTACATAAGTATAGGGTTGTAAATGATACTAAT CTTCCATTTGTAGGAGGTGCTGTGGGATATTTATCTTATGATTTAGGTAATTACATAGAAAATTTACCTAGAACTGCTGT AGATGATATTGAGATGCCTGATATGTATTTTGGATTTTATAATCATGTAATAGTTATAGACCATCTTGTGCAAAAAACTT ATATAGCTACTCCAAACATAGATATCGAATTAGAAGAAAAGATAATAGATAATATAGAACAAAGAATATTAAAAGAAGAG AAAAAAGGTATAGATAGCATATGTTATGAAGAAAAAGAAGTAACACCTATAAGACTTAAATCTAATTTTACAAAGGAAGA ATTTAAAAATGCAGTTCAAAGTGTTAGAGAGTACATAAGACAAGGAGATATATATCAAGCTAATTTAACACAAAGGTTCA GTGGAGAAACAGAACTTACAAGCTTTGAATTGTATAGGGACTTAAGAAGATTTAGCCCGGCACCATTTGGGGCATTCTTA AACTTTGAAGATGCACATATATTATCAAATTCTCCAGAAAGATTTATAAGATGTGTTAATAAGAGAATAGAAACTAGACC AATAAAAGGTACTCGTCCAAGAGGGAAAGATAAAAAAGAAGATTTAAGACTTCAACAAGAACTTAGAAATAGTGAAAAAG ATAGAGCTGAACTACTTATGATAGTAGATTTAGAAAGAAATGATATTGGCAGAATATCTAAAACTGGAAGTGTTAAAGTT CCAGAGCTATTTGTAATTGAACCATATGCAAATGTAAATCACTTAGTTTCCACAGTTGTAGGTGAGTTAAAAGATGATAA AGATGCTACTGATGTAATAAAAGCAACTTTTCCAGGGGGGTCTATAACAGGAGCACCTAAGATTAGAGCAATGGAAATTA TAGACGAATTAGAGCCAACGCAAAGAAATGTATATACTGGTTCAATAGGTTATATAGGTTTTAATGGTGATATGGATTTT AATATAGCAATTAGAACAATAATCAAAAATGACAAAAAAGTCTACTTTCAAGTTGGAGGAGGAATGACTTGGGATTCTGA CCCAGATGAAGAATATCAAGAAACACTTGATAAAGCTAAATCCATAATGAAGGCTTTGAGGGGATATTATGAAGAATAA
Upstream 100 bases:
>100_bases TATTTAATAGAAGGAGTACAGTTTCATCCAGAAGCTATTTTGTCAGAGTATGGTCATGAAATGCTTAAAAATTTTATAAC AGAAGCTAGAGAAAGGGTAC
Downstream 100 bases:
>100_bases TGTAGGTTTTGATAGTAGTTTAAGTAAATTTGGAATTGGTTTGTTTGAAACTATTAGAGTTAAAAATGGAATAGCAGTAG ATTTAGATATCCATATAGAA
Product: para-aminobenzoate synthase component I
Products: NA
Alternate protein names: ADC synthase; Para-aminobenzoate synthase component I [H]
Number of amino acids: Translated: 452; Mature: 452
Protein sequence:
>452_residues MCNMIREINTKLNSFEIFTIFRNEHDSFILDSAMDKEKLGRYSFISSQPFKVLKYKDTDENPLEVLKEELHKYRVVNDTN LPFVGGAVGYLSYDLGNYIENLPRTAVDDIEMPDMYFGFYNHVIVIDHLVQKTYIATPNIDIELEEKIIDNIEQRILKEE KKGIDSICYEEKEVTPIRLKSNFTKEEFKNAVQSVREYIRQGDIYQANLTQRFSGETELTSFELYRDLRRFSPAPFGAFL NFEDAHILSNSPERFIRCVNKRIETRPIKGTRPRGKDKKEDLRLQQELRNSEKDRAELLMIVDLERNDIGRISKTGSVKV PELFVIEPYANVNHLVSTVVGELKDDKDATDVIKATFPGGSITGAPKIRAMEIIDELEPTQRNVYTGSIGYIGFNGDMDF NIAIRTIIKNDKKVYFQVGGGMTWDSDPDEEYQETLDKAKSIMKALRGYYEE
Sequences:
>Translated_452_residues MCNMIREINTKLNSFEIFTIFRNEHDSFILDSAMDKEKLGRYSFISSQPFKVLKYKDTDENPLEVLKEELHKYRVVNDTN LPFVGGAVGYLSYDLGNYIENLPRTAVDDIEMPDMYFGFYNHVIVIDHLVQKTYIATPNIDIELEEKIIDNIEQRILKEE KKGIDSICYEEKEVTPIRLKSNFTKEEFKNAVQSVREYIRQGDIYQANLTQRFSGETELTSFELYRDLRRFSPAPFGAFL NFEDAHILSNSPERFIRCVNKRIETRPIKGTRPRGKDKKEDLRLQQELRNSEKDRAELLMIVDLERNDIGRISKTGSVKV PELFVIEPYANVNHLVSTVVGELKDDKDATDVIKATFPGGSITGAPKIRAMEIIDELEPTQRNVYTGSIGYIGFNGDMDF NIAIRTIIKNDKKVYFQVGGGMTWDSDPDEEYQETLDKAKSIMKALRGYYEE >Mature_452_residues MCNMIREINTKLNSFEIFTIFRNEHDSFILDSAMDKEKLGRYSFISSQPFKVLKYKDTDENPLEVLKEELHKYRVVNDTN LPFVGGAVGYLSYDLGNYIENLPRTAVDDIEMPDMYFGFYNHVIVIDHLVQKTYIATPNIDIELEEKIIDNIEQRILKEE KKGIDSICYEEKEVTPIRLKSNFTKEEFKNAVQSVREYIRQGDIYQANLTQRFSGETELTSFELYRDLRRFSPAPFGAFL NFEDAHILSNSPERFIRCVNKRIETRPIKGTRPRGKDKKEDLRLQQELRNSEKDRAELLMIVDLERNDIGRISKTGSVKV PELFVIEPYANVNHLVSTVVGELKDDKDATDVIKATFPGGSITGAPKIRAMEIIDELEPTQRNVYTGSIGYIGFNGDMDF NIAIRTIIKNDKKVYFQVGGGMTWDSDPDEEYQETLDKAKSIMKALRGYYEE
Specific function: Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine [H]
COG id: COG0147
COG function: function code EH; Anthranilate/para-aminobenzoate synthases component I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the anthranilate synthase component I family [H]
Homologues:
Organism=Escherichia coli, GI1788114, Length=435, Percent_Identity=42.2988505747126, Blast_Score=350, Evalue=2e-97, Organism=Escherichia coli, GI1787518, Length=371, Percent_Identity=34.2318059299191, Blast_Score=206, Evalue=2e-54, Organism=Escherichia coli, GI87082077, Length=200, Percent_Identity=26, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1786809, Length=197, Percent_Identity=24.8730964467005, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6320935, Length=434, Percent_Identity=38.4792626728111, Blast_Score=274, Evalue=2e-74, Organism=Saccharomyces cerevisiae, GI6324361, Length=502, Percent_Identity=27.6892430278884, Blast_Score=152, Evalue=9e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005801 - InterPro: IPR019999 - InterPro: IPR006805 - InterPro: IPR015890 - InterPro: IPR005802 [H]
Pfam domain/function: PF04715 Anth_synt_I_N; PF00425 Chorismate_bind [H]
EC number: =2.6.1.85 [H]
Molecular weight: Translated: 52260; Mature: 52260
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCNMIREINTKLNSFEIFTIFRNEHDSFILDSAMDKEKLGRYSFISSQPFKVLKYKDTDE CCCHHHHHHCCCCCEEEEEEEECCCCCEEHHHHCCHHHCCCEEECCCCCCEEEEECCCCC NPLEVLKEELHKYRVVNDTNLPFVGGAVGYLSYDLGNYIENLPRTAVDDIEMPDMYFGFY CHHHHHHHHHHHEEEECCCCCCEECCHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHH NHVIVIDHLVQKTYIATPNIDIELEEKIIDNIEQRILKEEKKGIDSICYEEKEVTPIRLK HHHHHHHHHHHHHEECCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEC SNFTKEEFKNAVQSVREYIRQGDIYQANLTQRFSGETELTSFELYRDLRRFSPAPFGAFL CCCCHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEE NFEDAHILSNSPERFIRCVNKRIETRPIKGTRPRGKDKKEDLRLQQELRNSEKDRAELLM CCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE IVDLERNDIGRISKTGSVKVPELFVIEPYANVNHLVSTVVGELKDDKDATDVIKATFPGG EEEECCCCCCCCCCCCCEECCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHEEEECCCC SITGAPKIRAMEIIDELEPTQRNVYTGSIGYIGFNGDMDFNIAIRTIIKNDKKVYFQVGG CCCCCCCHHHHHHHHHCCCCCCCEEECCEEEEEECCCCCEEEEEEEEECCCCEEEEEECC GMTWDSDPDEEYQETLDKAKSIMKALRGYYEE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MCNMIREINTKLNSFEIFTIFRNEHDSFILDSAMDKEKLGRYSFISSQPFKVLKYKDTDE CCCHHHHHHCCCCCEEEEEEEECCCCCEEHHHHCCHHHCCCEEECCCCCCEEEEECCCCC NPLEVLKEELHKYRVVNDTNLPFVGGAVGYLSYDLGNYIENLPRTAVDDIEMPDMYFGFY CHHHHHHHHHHHEEEECCCCCCEECCHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHH NHVIVIDHLVQKTYIATPNIDIELEEKIIDNIEQRILKEEKKGIDSICYEEKEVTPIRLK HHHHHHHHHHHHHEECCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEC SNFTKEEFKNAVQSVREYIRQGDIYQANLTQRFSGETELTSFELYRDLRRFSPAPFGAFL CCCCHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEE NFEDAHILSNSPERFIRCVNKRIETRPIKGTRPRGKDKKEDLRLQQELRNSEKDRAELLM CCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE IVDLERNDIGRISKTGSVKVPELFVIEPYANVNHLVSTVVGELKDDKDATDVIKATFPGG EEEECCCCCCCCCCCCCEECCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHEEEECCCC SITGAPKIRAMEIIDELEPTQRNVYTGSIGYIGFNGDMDFNIAIRTIIKNDKKVYFQVGG CCCCCCCHHHHHHHHHCCCCCCCEEECCEEEEEECCCCCEEEEEEEEECCCCEEEEEECC GMTWDSDPDEEYQETLDKAKSIMKALRGYYEE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6330050; 9097040; 9278503; 7896119; 2251281; 7592344 [H]