| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is pabA [H]
Identifier: 126699049
GI number: 126699049
Start: 1676146
End: 1676730
Strand: Direct
Name: pabA [H]
Synonym: CD1445
Alternate gene names: 126699049
Gene position: 1676146-1676730 (Clockwise)
Preceding gene: 126699048
Following gene: 126699050
Centisome position: 39.07
GC content: 31.62
Gene sequence:
>585_bases ATGATTCTTATGATAGACAATTATGATTCTTTTGTATACAACCTAGTCCAATATATAGAAGAATTAGGGGAAACAGTTGT AGTAAAAAGAAATAATGAAATCAAAATAAGTGACATTGAAGAACTAAATCCAGAGGTAATTGTGTTATCTCCAGGACCGT GTTCTCCAAAAGAAGCTGGTATTTGCATAGATATTGTTGAGCATTTTAAGGGGAAAAAACCTATACTAGGAATTTGTTTA GGTCACCAAACTATTGGACATGTTTTTGGAGGAGATATTATAAAAGCACAACAGCCTGTGCATGGAAAAGTATATAGTAT CAACCATACTAATAAAGGAGTTTTTAGGGGACTTAAAAATCCTTTAAATGTCACTAGGTATCATTCACTAATAATTGATT CCAATACAGTTCCAAAAGAATTAGAAATTACAGCAATTACTGATAAAGGGGAAATAATGGGGATTAGGCATAAGAAATAT TTAATAGAAGGAGTACAGTTTCATCCAGAAGCTATTTTGTCAGAGTATGGTCATGAAATGCTTAAAAATTTTATAACAGA AGCTAGAGAAAGGGTACATGTGTAA
Upstream 100 bases:
>100_bases AAGCTTTAGATATGTTTATTCCAAAAATGATTGAAAAAGGTTTTAAATTTGTAACAGTTTCTGAGTTGATAAAATAATTT TTAGGGGGGAGATTTACAGT
Downstream 100 bases:
>100_bases TATGATAAGAGAGATAAATACTAAATTAAATTCTTTTGAGATATTTACTATTTTTAGAAATGAACATGACAGTTTTATAT TAGACAGTGCTATGGATAAA
Product: para-aminobenzoate synthase glutamine amidotransferase component II
Products: NA
Alternate protein names: Para-aminobenzoate synthase glutamine amidotransferase component II; ADC synthase; Anthranilate synthase component II [H]
Number of amino acids: Translated: 194; Mature: 194
Protein sequence:
>194_residues MILMIDNYDSFVYNLVQYIEELGETVVVKRNNEIKISDIEELNPEVIVLSPGPCSPKEAGICIDIVEHFKGKKPILGICL GHQTIGHVFGGDIIKAQQPVHGKVYSINHTNKGVFRGLKNPLNVTRYHSLIIDSNTVPKELEITAITDKGEIMGIRHKKY LIEGVQFHPEAILSEYGHEMLKNFITEARERVHV
Sequences:
>Translated_194_residues MILMIDNYDSFVYNLVQYIEELGETVVVKRNNEIKISDIEELNPEVIVLSPGPCSPKEAGICIDIVEHFKGKKPILGICL GHQTIGHVFGGDIIKAQQPVHGKVYSINHTNKGVFRGLKNPLNVTRYHSLIIDSNTVPKELEITAITDKGEIMGIRHKKY LIEGVQFHPEAILSEYGHEMLKNFITEARERVHV >Mature_194_residues MILMIDNYDSFVYNLVQYIEELGETVVVKRNNEIKISDIEELNPEVIVLSPGPCSPKEAGICIDIVEHFKGKKPILGICL GHQTIGHVFGGDIIKAQQPVHGKVYSINHTNKGVFRGLKNPLNVTRYHSLIIDSNTVPKELEITAITDKGEIMGIRHKKY LIEGVQFHPEAILSEYGHEMLKNFITEARERVHV
Specific function: Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine and also involved in the synthesis of anthranilate [H]
COG id: COG0512
COG function: function code EH; Anthranilate/para-aminobenzoate synthases component II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glutamine amidotransferase type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1789760, Length=185, Percent_Identity=55.1351351351351, Blast_Score=244, Evalue=2e-66, Organism=Escherichia coli, GI1787517, Length=195, Percent_Identity=42.0512820512821, Blast_Score=152, Evalue=2e-38, Organism=Saccharomyces cerevisiae, GI6322638, Length=185, Percent_Identity=47.027027027027, Blast_Score=190, Evalue=1e-49, Organism=Saccharomyces cerevisiae, GI6324361, Length=211, Percent_Identity=30.8056872037915, Blast_Score=86, Evalue=5e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006220 - InterPro: IPR001317 - InterPro: IPR011702 - InterPro: IPR017926 - InterPro: IPR000991 - InterPro: IPR006221 [H]
Pfam domain/function: PF00117 GATase [H]
EC number: =2.6.1.85; =4.1.3.27 [H]
Molecular weight: Translated: 21881; Mature: 21881
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS00442 GATASE_TYPE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILMIDNYDSFVYNLVQYIEELGETVVVKRNNEIKISDIEELNPEVIVLSPGPCSPKEAG CEEEEECCHHHHHHHHHHHHHHCCEEEEECCCEEEEEEHHHCCCCEEEECCCCCCCCCCC ICIDIVEHFKGKKPILGICLGHQTIGHVFGGDIIKAQQPVHGKVYSINHTNKGVFRGLKN EEHHHHHHCCCCCCEEEEEECCHHHHHHHCCCEEECCCCCCCEEEEECCCCCHHHHHCCC PLNVTRYHSLIIDSNTVPKELEITAITDKGEIMGIRHKKYLIEGVQFHPEAILSEYGHEM CCCHHEEEEEEECCCCCCCEEEEEEEECCCCEEEEEHHHHHHHCCCCCHHHHHHHHHHHH LKNFITEARERVHV HHHHHHHHHHHCCC >Mature Secondary Structure MILMIDNYDSFVYNLVQYIEELGETVVVKRNNEIKISDIEELNPEVIVLSPGPCSPKEAG CEEEEECCHHHHHHHHHHHHHHCCEEEEECCCEEEEEEHHHCCCCEEEECCCCCCCCCCC ICIDIVEHFKGKKPILGICLGHQTIGHVFGGDIIKAQQPVHGKVYSINHTNKGVFRGLKN EEHHHHHHCCCCCCEEEEEECCHHHHHHHCCCEEECCCCCCCEEEEECCCCCHHHHHCCC PLNVTRYHSLIIDSNTVPKELEITAITDKGEIMGIRHKKYLIEGVQFHPEAILSEYGHEM CCCHHEEEEEEECCCCCCCEEEEEEEECCCCEEEEEHHHHHHHCCCCCHHHHHHHHHHHH LKNFITEARERVHV HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2123867; 7584024; 9384377 [H]