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The map label for this gene is ygeV [H]

Identifier: 126699041

GI number: 126699041

Start: 1668362

End: 1668955

Strand: Direct

Name: ygeV [H]

Synonym: CD1437

Alternate gene names: 126699041

Gene position: 1668362-1668955 (Clockwise)

Preceding gene: 126699040

Following gene: 126699042

Centisome position: 38.89

GC content: 29.29

Gene sequence:

>594_bases
TTGAATTTAAATAATATAACGAATTACGTTCAAAGTATTTGCGAGAATATTTCTAATGTCTTGGATGTAGATGTTACTTT
AGTTACAAAAGATTTAACTAGGATAGCAGGTACAGGAATATTCAGAGGTAAAATAGGAGAGACAATATCAGAGAAGTCAG
TGTACTCTCTTGTTTTAAAAGATGGAAAATCCTATGTTATAAATAAAGAAATAGAAGAGAACTGTAATAAATGTGCAAAT
AGAGAAAATTGTAAAGAGTTAGCTGATATATGTACTCCCGTTAAAATGGGAGAGCATATACTTGGAATCTTGGGTATAGC
TGCGTTTAATGAAGAACAAAAAGAAAAGATACTTTCAAAAGATAAGGAGTTAACTGCTTTTGTAAGGAGTATGTCTGATT
TAATATCTTTTAAACTAGATGAACTTTATAAACAAGAAGTTAAGACTATAGATGACCTTGAGAGGGAAGCTATAGAAAAT
GCCATAAAGAAATATGGAAGTAATACAGAAGGTATGAAAAAAGTAGCTGAGGCATTAAATATAGGTATAGCTACACTCTA
TAGAAAAGTAAAAAAATTCAACATTAAAAGTTAA

Upstream 100 bases:

>100_bases
AAGCCTAATGAGACACAACCACAACCGCAAGCTTAAAGTTCTCAAGAATAGGATTTATGTAGAGTAATAAAAAATATAAA
TCTAAATAGGAGGGATTACT

Downstream 100 bases:

>100_bases
TAGTATTGAAAAAGAGGTAACCTTTTTATGAAAAGAAGAGGATTACCTTTTTTATTATGAGAATGGTGGAAAAATATGTA
TAGTTTTGACTTGACATATT

Product: sigma-54-dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
LNLNNITNYVQSICENISNVLDVDVTLVTKDLTRIAGTGIFRGKIGETISEKSVYSLVLKDGKSYVINKEIEENCNKCAN
RENCKELADICTPVKMGEHILGILGIAAFNEEQKEKILSKDKELTAFVRSMSDLISFKLDELYKQEVKTIDDLEREAIEN
AIKKYGSNTEGMKKVAEALNIGIATLYRKVKKFNIKS

Sequences:

>Translated_197_residues
MNLNNITNYVQSICENISNVLDVDVTLVTKDLTRIAGTGIFRGKIGETISEKSVYSLVLKDGKSYVINKEIEENCNKCAN
RENCKELADICTPVKMGEHILGILGIAAFNEEQKEKILSKDKELTAFVRSMSDLISFKLDELYKQEVKTIDDLEREAIEN
AIKKYGSNTEGMKKVAEALNIGIATLYRKVKKFNIKS
>Mature_197_residues
MNLNNITNYVQSICENISNVLDVDVTLVTKDLTRIAGTGIFRGKIGETISEKSVYSLVLKDGKSYVINKEIEENCNKCAN
RENCKELADICTPVKMGEHILGILGIAAFNEEQKEKILSKDKELTAFVRSMSDLISFKLDELYKQEVKTIDDLEREAIEN
AIKKYGSNTEGMKKVAEALNIGIATLYRKVKKFNIKS

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=141, Percent_Identity=29.7872340425532, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 22120; Mature: 22120

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNNITNYVQSICENISNVLDVDVTLVTKDLTRIAGTGIFRGKIGETISEKSVYSLVLK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
DGKSYVINKEIEENCNKCANRENCKELADICTPVKMGEHILGILGIAAFNEEQKEKILSK
CCCCCEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
DKELTAFVRSMSDLISFKLDELYKQEVKTIDDLEREAIENAIKKYGSNTEGMKKVAEALN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IGIATLYRKVKKFNIKS
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNLNNITNYVQSICENISNVLDVDVTLVTKDLTRIAGTGIFRGKIGETISEKSVYSLVLK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
DGKSYVINKEIEENCNKCANRENCKELADICTPVKMGEHILGILGIAAFNEEQKEKILSK
CCCCCEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
DKELTAFVRSMSDLISFKLDELYKQEVKTIDDLEREAIENAIKKYGSNTEGMKKVAEALN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IGIATLYRKVKKFNIKS
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]