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The map label for this gene is 126699036

Identifier: 126699036

GI number: 126699036

Start: 1661676

End: 1662290

Strand: Direct

Name: 126699036

Synonym: CD1432

Alternate gene names: NA

Gene position: 1661676-1662290 (Clockwise)

Preceding gene: 126699035

Following gene: 126699038

Centisome position: 38.73

GC content: 29.27

Gene sequence:

>615_bases
GTGGGAGTGAGATATTTGGCAAAACAAAAGTTTTATGCTGTGAAAAAAGGTAAAAATATAGGTGTATATAATACATGGGA
TGAGTGCAAAAAACAAGTAAATGGATTCTCAGGAGCTGAATATAAGAGTTTTTCTACTTTTCAAGAAGCTAAAGAATATA
TTGATGGGTCAGAAAAATTGAGTTTTCAAGAAGATAAGGAGTTTATAGAAGCATATGTAGATGGAAGTTATGAACATTCA
GTAAAAATGTATGGTTCGGGTGTTGTGATTTTAAAAAATAATGAAGTTATAAAAACTTATAGTGAAAAAGGAAAAGAGAA
AACTTTAGTAAGTATGAGAAATGTAGCTGGAGAGATAGAGGCTTCTAAAATTGCAATGCAGTACTGTATTGACAATAATG
TTCAAAACTTGATTTTATACTTTGACTATGAAGGGATTGAAAAGTGGTGTACTGGAGTTTGGAAAACAAATAAAGAAGGA
ACTATAGCATATAAAAATTTCTATGACAGTATTAAGAATAAGCTTAATGTAAAATTTACAAAGGTTAAAGCTCATTCTGG
AAATAAGTATAATGAGGAAGCTGATAAATTAGCTAAAAAAGCTATTGGTGTATAA

Upstream 100 bases:

>100_bases
ATATTGATATTATAAAAAAAGATATGAAAGTAAAATATTTTGATAGAAACTATCTTATAAATTTAGATATATTTATGAGA
GAAGAAGATAAAAATTAAGA

Downstream 100 bases:

>100_bases
TAAAAAAATATTTATACATAATTACATGGTATAAGAGTATATCTAAATTCCTACTTTATAATTAAACAACTTATAATTAA
ATAAATTTTGATTAAAAAAG

Product: ribonuclease

Products: NA

Alternate protein names: Ribonuclease HI; Ribonuclease H-Related Protein; RNAse H Family Protein; Ribonuclease; Ribonuclease H1-Like; RNAse H

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MGVRYLAKQKFYAVKKGKNIGVYNTWDECKKQVNGFSGAEYKSFSTFQEAKEYIDGSEKLSFQEDKEFIEAYVDGSYEHS
VKMYGSGVVILKNNEVIKTYSEKGKEKTLVSMRNVAGEIEASKIAMQYCIDNNVQNLILYFDYEGIEKWCTGVWKTNKEG
TIAYKNFYDSIKNKLNVKFTKVKAHSGNKYNEEADKLAKKAIGV

Sequences:

>Translated_204_residues
MGVRYLAKQKFYAVKKGKNIGVYNTWDECKKQVNGFSGAEYKSFSTFQEAKEYIDGSEKLSFQEDKEFIEAYVDGSYEHS
VKMYGSGVVILKNNEVIKTYSEKGKEKTLVSMRNVAGEIEASKIAMQYCIDNNVQNLILYFDYEGIEKWCTGVWKTNKEG
TIAYKNFYDSIKNKLNVKFTKVKAHSGNKYNEEADKLAKKAIGV
>Mature_203_residues
GVRYLAKQKFYAVKKGKNIGVYNTWDECKKQVNGFSGAEYKSFSTFQEAKEYIDGSEKLSFQEDKEFIEAYVDGSYEHSV
KMYGSGVVILKNNEVIKTYSEKGKEKTLVSMRNVAGEIEASKIAMQYCIDNNVQNLILYFDYEGIEKWCTGVWKTNKEGT
IAYKNFYDSIKNKLNVKFTKVKAHSGNKYNEEADKLAKKAIGV

Specific function: Unknown

COG id: COG3341

COG function: function code R; Predicted double-stranded RNA/RNA-DNA hybrid binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6323890, Length=50, Percent_Identity=52, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23338; Mature: 23206

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVRYLAKQKFYAVKKGKNIGVYNTWDECKKQVNGFSGAEYKSFSTFQEAKEYIDGSEKL
CCCHHHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCC
SFQEDKEFIEAYVDGSYEHSVKMYGSGVVILKNNEVIKTYSEKGKEKTLVSMRNVAGEIE
CCHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCEEEHHHHCCHHHHHHHHHHHHCHHH
ASKIAMQYCIDNNVQNLILYFDYEGIEKWCTGVWKTNKEGTIAYKNFYDSIKNKLNVKFT
HHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCEEEE
KVKAHSGNKYNEEADKLAKKAIGV
EEEECCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
GVRYLAKQKFYAVKKGKNIGVYNTWDECKKQVNGFSGAEYKSFSTFQEAKEYIDGSEKL
CCHHHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCC
SFQEDKEFIEAYVDGSYEHSVKMYGSGVVILKNNEVIKTYSEKGKEKTLVSMRNVAGEIE
CCHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCEEEHHHHCCHHHHHHHHHHHHCHHH
ASKIAMQYCIDNNVQNLILYFDYEGIEKWCTGVWKTNKEGTIAYKNFYDSIKNKLNVKFT
HHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCEEEE
KVKAHSGNKYNEEADKLAKKAIGV
EEEECCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA