| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is spaK [H]
Identifier: 126698951
GI number: 126698951
Start: 1568072
End: 1569460
Strand: Direct
Name: spaK [H]
Synonym: CD1352
Alternate gene names: 126698951
Gene position: 1568072-1569460 (Clockwise)
Preceding gene: 126698950
Following gene: 126698953
Centisome position: 36.55
GC content: 25.13
Gene sequence:
>1389_bases ATGCTTGGAGGTAAAAAATCTAACAACAAAAAAGTTGAAAAGTTAAGAACTATTTTTATAAAATATTTATCTTTATTCTT TATTATGACAATTTCAATTGTACTCTTTTTAATGTTATCATTTTCTGTATTATTATCATCAGGTGTAATTTTACCAGCTA ATTATGCAGAAAAACAATTTAATAAATATAAAGAACAGATTATTTCAAGTGAAAAAGTAACTGAAGATATAATTCCAAGT ATATATGAGTATGGGGTTTATACTTTAGATGGGAATTTAATTTCAGGTACCTTTAATAAAAAAGAATCAAAAGAAGTATG GAATTTAATGAGAGATATTGAAGAAAGGCATGCATATTCAGAAAGTTATATAAAGTTTTTTAAGAAAGATGAAGTTTTTA TAATAAAATACAAAATAGTATCAGAGTATAGTTCTCCAATTTTAAGAGCATATTTACCAAAACCAGAGACATTGGGTATG ATTATTTTTAGTATAATATTTTTTATTGAAATTGTTATATTATCAAAAGTATTTGGCAAGAAATTTAATATTGAAATGGA GCTTTTAAAAAATACTACAGAAAAAATAGAACAACAGGATTTAGATTTTGTTGTAGAATCTAGTAAAATTTATGAAATTA ATAATGTCCTTTTTTCTATGGATAAAATGAAGTTGGCGTTAAAAGATTCTTTAGAAAAACAATGGATGCTAGAAGAAAAT AGAAAGGAACAGATATCTGCACTGGCACATGATATAAAAACACCACTAACAATTATACATGGAAATACTGACTTATTAAT TGAAATAAATGAAAATCCTGAGTTATTAGAATACATGGAATATATCTCAAAGGGTGTCACTCAAATAGAAAAATATATTA ATACTTTAATAGATATATCAAAAACAGAGAATGGCTATATATTAAATAAAGAAGCAATCAGTATGAGTGAGTTTATAAAA GATGTCTTAGTGCAAATAGAAGCATTAGCTAGTACTAAAAACTTAGATGTGGAGTTTTATAAACAAGATAATTTGCCTAA AAATATAACTATAGATAGAGAACTGTTATTCAGAGCTATTATGAATATAATTTCAAATGCTATAGATTATTCACCAAGCC AGAGTAAACTATACATAAGTGTATCAGTATGTAATAAATACTTAAAATTTGTAGTTACAGATTGTGGAAGTGGTTTTTCT AAAGCAGATTTGTCAAAAGCTACAGAACAGTTTTATACAGGAGATTTGAGTAGAAATTCTAAATCTCATTATGGAATGGG ACTCTATATTGTAAATAATATTGTACAAAAACATAATGGGATTTTATATATTGAAAATTCTGTGAAAACTGGTGGTGCTA TGGTAACAATTGAAATACCAATAGTTTAG
Upstream 100 bases:
>100_bases TAAAATATAACTTAGCAATAAAAAGATATAAAATAATCAAATAAAAAACTGGTTGGGTATTAATTATGAATTAATTAAAC TATTGGAGGACAGGGTACAA
Downstream 100 bases:
>100_bases TAAATAATATCCATTTTGTAAATACCTAAATTTTATGATTTATAGGTATTTATAAAATGGATAGTTTTTTTGACTTTATA TATTAGTTAAATCTGATAAA
Product: lantibiotic two-component sensor histidine kinase
Products: NA
Alternate protein names: Subtilin biosynthesis sensor protein spaK [H]
Number of amino acids: Translated: 462; Mature: 462
Protein sequence:
>462_residues MLGGKKSNNKKVEKLRTIFIKYLSLFFIMTISIVLFLMLSFSVLLSSGVILPANYAEKQFNKYKEQIISSEKVTEDIIPS IYEYGVYTLDGNLISGTFNKKESKEVWNLMRDIEERHAYSESYIKFFKKDEVFIIKYKIVSEYSSPILRAYLPKPETLGM IIFSIIFFIEIVILSKVFGKKFNIEMELLKNTTEKIEQQDLDFVVESSKIYEINNVLFSMDKMKLALKDSLEKQWMLEEN RKEQISALAHDIKTPLTIIHGNTDLLIEINENPELLEYMEYISKGVTQIEKYINTLIDISKTENGYILNKEAISMSEFIK DVLVQIEALASTKNLDVEFYKQDNLPKNITIDRELLFRAIMNIISNAIDYSPSQSKLYISVSVCNKYLKFVVTDCGSGFS KADLSKATEQFYTGDLSRNSKSHYGMGLYIVNNIVQKHNGILYIENSVKTGGAMVTIEIPIV
Sequences:
>Translated_462_residues MLGGKKSNNKKVEKLRTIFIKYLSLFFIMTISIVLFLMLSFSVLLSSGVILPANYAEKQFNKYKEQIISSEKVTEDIIPS IYEYGVYTLDGNLISGTFNKKESKEVWNLMRDIEERHAYSESYIKFFKKDEVFIIKYKIVSEYSSPILRAYLPKPETLGM IIFSIIFFIEIVILSKVFGKKFNIEMELLKNTTEKIEQQDLDFVVESSKIYEINNVLFSMDKMKLALKDSLEKQWMLEEN RKEQISALAHDIKTPLTIIHGNTDLLIEINENPELLEYMEYISKGVTQIEKYINTLIDISKTENGYILNKEAISMSEFIK DVLVQIEALASTKNLDVEFYKQDNLPKNITIDRELLFRAIMNIISNAIDYSPSQSKLYISVSVCNKYLKFVVTDCGSGFS KADLSKATEQFYTGDLSRNSKSHYGMGLYIVNNIVQKHNGILYIENSVKTGGAMVTIEIPIV >Mature_462_residues MLGGKKSNNKKVEKLRTIFIKYLSLFFIMTISIVLFLMLSFSVLLSSGVILPANYAEKQFNKYKEQIISSEKVTEDIIPS IYEYGVYTLDGNLISGTFNKKESKEVWNLMRDIEERHAYSESYIKFFKKDEVFIIKYKIVSEYSSPILRAYLPKPETLGM IIFSIIFFIEIVILSKVFGKKFNIEMELLKNTTEKIEQQDLDFVVESSKIYEINNVLFSMDKMKLALKDSLEKQWMLEEN RKEQISALAHDIKTPLTIIHGNTDLLIEINENPELLEYMEYISKGVTQIEKYINTLIDISKTENGYILNKEAISMSEFIK DVLVQIEALASTKNLDVEFYKQDNLPKNITIDRELLFRAIMNIISNAIDYSPSQSKLYISVSVCNKYLKFVVTDCGSGFS KADLSKATEQFYTGDLSRNSKSHYGMGLYIVNNIVQKHNGILYIENSVKTGGAMVTIEIPIV
Specific function: Member of the two-component regulatory system spaK/spaR involved in the regulation of the biosynthesis of lantibiotic subtilin. SpaK may function as a membrane-associated protein kinase that phosphorylates spaR in response to environmental signals [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1786912, Length=269, Percent_Identity=26.3940520446097, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1788393, Length=239, Percent_Identity=26.3598326359833, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786783, Length=305, Percent_Identity=21.3114754098361, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1786600, Length=260, Percent_Identity=24.6153846153846, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790346, Length=277, Percent_Identity=27.4368231046931, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1790861, Length=255, Percent_Identity=25.0980392156863, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1788279, Length=288, Percent_Identity=25, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1790436, Length=232, Percent_Identity=24.1379310344828, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1788549, Length=220, Percent_Identity=25, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI48994928, Length=241, Percent_Identity=24.896265560166, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR008358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 53126; Mature: 53126
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGGKKSNNKKVEKLRTIFIKYLSLFFIMTISIVLFLMLSFSVLLSSGVILPANYAEKQF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHH NKYKEQIISSEKVTEDIIPSIYEYGVYTLDGNLISGTFNKKESKEVWNLMRDIEERHAYS HHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHH ESYIKFFKKDEVFIIKYKIVSEYSSPILRAYLPKPETLGMIIFSIIFFIEIVILSKVFGK HHHHHHHCCCCEEEEEEEEHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC KFNIEMELLKNTTEKIEQQDLDFVVESSKIYEINNVLFSMDKMKLALKDSLEKQWMLEEN CCCCHHHHHHHHHHHHHHHCHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKEQISALAHDIKTPLTIIHGNTDLLIEINENPELLEYMEYISKGVTQIEKYINTLIDIS HHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC KTENGYILNKEAISMSEFIKDVLVQIEALASTKNLDVEFYKQDNLPKNITIDRELLFRAI CCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHH MNIISNAIDYSPSQSKLYISVSVCNKYLKFVVTDCGSGFSKADLSKATEQFYTGDLSRNS HHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC KSHYGMGLYIVNNIVQKHNGILYIENSVKTGGAMVTIEIPIV CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCC >Mature Secondary Structure MLGGKKSNNKKVEKLRTIFIKYLSLFFIMTISIVLFLMLSFSVLLSSGVILPANYAEKQF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHH NKYKEQIISSEKVTEDIIPSIYEYGVYTLDGNLISGTFNKKESKEVWNLMRDIEERHAYS HHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHH ESYIKFFKKDEVFIIKYKIVSEYSSPILRAYLPKPETLGMIIFSIIFFIEIVILSKVFGK HHHHHHHCCCCEEEEEEEEHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC KFNIEMELLKNTTEKIEQQDLDFVVESSKIYEINNVLFSMDKMKLALKDSLEKQWMLEEN CCCCHHHHHHHHHHHHHHHCHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKEQISALAHDIKTPLTIIHGNTDLLIEINENPELLEYMEYISKGVTQIEKYINTLIDIS HHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC KTENGYILNKEAISMSEFIKDVLVQIEALASTKNLDVEFYKQDNLPKNITIDRELLFRAI CCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHH MNIISNAIDYSPSQSKLYISVSVCNKYLKFVVTDCGSGFSKADLSKATEQFYTGDLSRNS HHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC KSHYGMGLYIVNNIVQKHNGILYIENSVKTGGAMVTIEIPIV CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8439156; 8085823 [H]