| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698950
Identifier: 126698950
GI number: 126698950
Start: 1567179
End: 1567937
Strand: Direct
Name: 126698950
Synonym: CD1351
Alternate gene names: NA
Gene position: 1567179-1567937 (Clockwise)
Preceding gene: 126698949
Following gene: 126698951
Centisome position: 36.53
GC content: 27.27
Gene sequence:
>759_bases ATGAGACAGTTAATAAGAATATTTTGTTCTGATTTAATAAAATTAAAGAGAAATTTTATAATACTAATGCACATTTGCAT TGCTTTAATGGGGATGGGATTGTTTTTATGGTATTATAAGGTTTCAGGAGCTGATAATATACTAAAGATAGTAGGATATT TACAAGTTATAGCAATAGCTTTTCCTTTATTGTCAGGTGTTGTGTGTTCAATGTTTGTTGAACAAGAATATTATGCAGGG AATTATAAACATATGTTAACAACATCTAATCCAAAATATCTTACTCTTATAAGTAAATATATAATCTTAGTATGTCTTGG TTTTGTAGCAACATTAGTGTCTGTATTAGGTTTTAAATTTGGTATATCTAAGGCTTACTTTACATCAAGCTTTTATATGA TTTCAATTCTAATTTTAATTGCGTGTAATTTATTTGAATACATATTACATTTATTCTTAAGTTTAAGGTTCGGAAAAGGA ACATCAATTGGAGTAGGTATAGTTGAAATGTTACTTTCAGCATTATTATTAACTGGATTGGGTTCTGGTATTTGGCAGTA TTTTCCTTGTGCATGGGGTGTTAGATTTATAACTATTTGGTCGTCTTTTTCAAGTTCTAAAACGGTTGAATATATAAAGG TTGAATCAATAAAATCATATCAATCAACAGGTTTAATTTGTGGTTTTGTAACAATTTTAGCATTTGTAATTTTATGTATT TGGTTTTCTAAATGGGAAGGTAAAAAATCAGAAGAATAG
Upstream 100 bases:
>100_bases AATGCTGTTATTTTGCCAGGAGTATTAATATCTATTGTTTTATTTGTATTATTTGCTTTAGCTACAAGGGTTTGGTTCAA TAATAGAGAGGTGAAGTAAT
Downstream 100 bases:
>100_bases AGTAAAAATTGACTGTTTATTTATATTATTATGTTAAAATATAACTTAGCAATAAAAAGATATAAAATAATCAAATAAAA AACTGGTTGGGTATTAATTA
Product: lantibiotic ABC transporter permease
Products: NA
Alternate protein names: Permease; Lantibiotic ABC Transporter Permease; Lantibiotic Transport-Associated PermeaG/MutG; Lantibiotic ABC Transporter; Bacteriocin ABC Transporter; Bacteriocin ABC Transporter Permease Protein Subunit; Transporter Protein; Bacteriocin ABC Transporter Permease Subunit; Lantibiotic ABC Transporter Permease Protein; Bacteriocin Abc Transporter; Antibiotic ABC Transporter; Antibiotic ABC Transporter Protein MutG; Subtilin ABC Transporter Permease
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MRQLIRIFCSDLIKLKRNFIILMHICIALMGMGLFLWYYKVSGADNILKIVGYLQVIAIAFPLLSGVVCSMFVEQEYYAG NYKHMLTTSNPKYLTLISKYIILVCLGFVATLVSVLGFKFGISKAYFTSSFYMISILILIACNLFEYILHLFLSLRFGKG TSIGVGIVEMLLSALLLTGLGSGIWQYFPCAWGVRFITIWSSFSSSKTVEYIKVESIKSYQSTGLICGFVTILAFVILCI WFSKWEGKKSEE
Sequences:
>Translated_252_residues MRQLIRIFCSDLIKLKRNFIILMHICIALMGMGLFLWYYKVSGADNILKIVGYLQVIAIAFPLLSGVVCSMFVEQEYYAG NYKHMLTTSNPKYLTLISKYIILVCLGFVATLVSVLGFKFGISKAYFTSSFYMISILILIACNLFEYILHLFLSLRFGKG TSIGVGIVEMLLSALLLTGLGSGIWQYFPCAWGVRFITIWSSFSSSKTVEYIKVESIKSYQSTGLICGFVTILAFVILCI WFSKWEGKKSEE >Mature_252_residues MRQLIRIFCSDLIKLKRNFIILMHICIALMGMGLFLWYYKVSGADNILKIVGYLQVIAIAFPLLSGVVCSMFVEQEYYAG NYKHMLTTSNPKYLTLISKYIILVCLGFVATLVSVLGFKFGISKAYFTSSFYMISILILIACNLFEYILHLFLSLRFGKG TSIGVGIVEMLLSALLLTGLGSGIWQYFPCAWGVRFITIWSSFSSSKTVEYIKVESIKSYQSTGLICGFVTILAFVILCI WFSKWEGKKSEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28482; Mature: 28482
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQLIRIFCSDLIKLKRNFIILMHICIALMGMGLFLWYYKVSGADNILKIVGYLQVIAIA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH FPLLSGVVCSMFVEQEYYAGNYKHMLTTSNPKYLTLISKYIILVCLGFVATLVSVLGFKF HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GISKAYFTSSFYMISILILIACNLFEYILHLFLSLRFGKGTSIGVGIVEMLLSALLLTGL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH GSGIWQYFPCAWGVRFITIWSSFSSSKTVEYIKVESIKSYQSTGLICGFVTILAFVILCI CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH WFSKWEGKKSEE HHHHCCCCCCCC >Mature Secondary Structure MRQLIRIFCSDLIKLKRNFIILMHICIALMGMGLFLWYYKVSGADNILKIVGYLQVIAIA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH FPLLSGVVCSMFVEQEYYAGNYKHMLTTSNPKYLTLISKYIILVCLGFVATLVSVLGFKF HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GISKAYFTSSFYMISILILIACNLFEYILHLFLSLRFGKGTSIGVGIVEMLLSALLLTGL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH GSGIWQYFPCAWGVRFITIWSSFSSSKTVEYIKVESIKSYQSTGLICGFVTILAFVILCI CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH WFSKWEGKKSEE HHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA