| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698947
Identifier: 126698947
GI number: 126698947
Start: 1565100
End: 1565636
Strand: Direct
Name: 126698947
Synonym: CD1348
Alternate gene names: NA
Gene position: 1565100-1565636 (Clockwise)
Preceding gene: 126698946
Following gene: 126698948
Centisome position: 36.48
GC content: 25.88
Gene sequence:
>537_bases ATGAATAAAATAGCAGTAAGTTTTTTAATAATTGCTACTACTTTATTGAGTACGGCATGTATGGATTATAGCATCAGTGC AGTTGAGCTAGTTGATTCTAAAGAATCAGCAGTTGTAAAGAAGGATGAAGATGCAAAAGAAGAAACAACTAGTAAAATGA TTAATTCTAAAAAAACTACTAAAATACCTATAGAGATAATTTCAAAGGATGAGAAAATAGTAAAGTACTTACAGATTGAT GAAGAAAGTTCACTTAAGGATAAACTGCGATTAATCTTAGATACATTATCAAATGAGTATTTTAATGGTTTAGACATGGA AGTAGAAGTTAAGGAAAAAGATAATCTTGTTAAAATAAACTTGATAGAACCAGATAAAAAAAGTAGAGTTTCTTGGAAAG ATGATTATTTGAATGAACAAAATATAATATATACTATAAATAATATTATTAAAAATGTCATCCAAGAAGAAGATAATAGC ATTTGGATTGAAGAAGTAGAGATATACTACAATGGAAAATTAATAGAATTAAGATAA
Upstream 100 bases:
>100_bases TAATTTACTATAATAATTCATAAATTGATTTAAAAGTATAAAAATATAATCTATACTATGGTATAATAAGTATCGAAAGA GAATTAGGAGAGGGATACTT
Downstream 100 bases:
>100_bases AAAAAGATGTGTTTTTAACACATCTTTTTTTGTTTTTTAATTCTTATAAAATCCTTATATTTATGATTTAGAATGATTCT TGTAAATAAGTTTGACAAAA
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MNKIAVSFLIIATTLLSTACMDYSISAVELVDSKESAVVKKDEDAKEETTSKMINSKKTTKIPIEIISKDEKIVKYLQID EESSLKDKLRLILDTLSNEYFNGLDMEVEVKEKDNLVKINLIEPDKKSRVSWKDDYLNEQNIIYTINNIIKNVIQEEDNS IWIEEVEIYYNGKLIELR
Sequences:
>Translated_178_residues MNKIAVSFLIIATTLLSTACMDYSISAVELVDSKESAVVKKDEDAKEETTSKMINSKKTTKIPIEIISKDEKIVKYLQID EESSLKDKLRLILDTLSNEYFNGLDMEVEVKEKDNLVKINLIEPDKKSRVSWKDDYLNEQNIIYTINNIIKNVIQEEDNS IWIEEVEIYYNGKLIELR >Mature_178_residues MNKIAVSFLIIATTLLSTACMDYSISAVELVDSKESAVVKKDEDAKEETTSKMINSKKTTKIPIEIISKDEKIVKYLQID EESSLKDKLRLILDTLSNEYFNGLDMEVEVKEKDNLVKINLIEPDKKSRVSWKDDYLNEQNIIYTINNIIKNVIQEEDNS IWIEEVEIYYNGKLIELR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20601; Mature: 20601
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKIAVSFLIIATTLLSTACMDYSISAVELVDSKESAVVKKDEDAKEETTSKMINSKKTT CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHCCCCCC KIPIEIISKDEKIVKYLQIDEESSLKDKLRLILDTLSNEYFNGLDMEVEVKEKDNLVKIN CCEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEE LIEPDKKSRVSWKDDYLNEQNIIYTINNIIKNVIQEEDNSIWIEEVEIYYNGKLIELR EECCCCCCCCCCCHHCCCCCCEEEEHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEEC >Mature Secondary Structure MNKIAVSFLIIATTLLSTACMDYSISAVELVDSKESAVVKKDEDAKEETTSKMINSKKTT CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHCCCCCC KIPIEIISKDEKIVKYLQIDEESSLKDKLRLILDTLSNEYFNGLDMEVEVKEKDNLVKIN CCEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEE LIEPDKKSRVSWKDDYLNEQNIIYTINNIIKNVIQEEDNSIWIEEVEIYYNGKLIELR EECCCCCCCCCCCHHCCCCCCEEEEHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA