| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is 126698946
Identifier: 126698946
GI number: 126698946
Start: 1563928
End: 1564998
Strand: Direct
Name: 126698946
Synonym: CD1347
Alternate gene names: NA
Gene position: 1563928-1564998 (Clockwise)
Preceding gene: 126698945
Following gene: 126698947
Centisome position: 36.45
GC content: 25.4
Gene sequence:
>1071_bases ATGAATAAAAAACTTGCTATATTTGCTGCAGTTTTATTGGTAATAGGTATAATAGGGACAACATGGTCAGGGATTTTAGT TATGCCAAGCCTAATAAACTTTGGTTTAGAAAAGGAAGCTGAATTTAAAAAAGAAAATAAACTTTATCAAGAAAAAGTAA ATATTGACAAGTTAGATATAGCTGTTGACAATATAAACGTTACAATAAAGAAAAGTTCAAGTGAAGATGTGCGTGTAACA ACAAGAGGAAATAATGAGTTTTACAAATACAATGTAACTTTAAAAGATAAGACTTTAGTTGTAAAAGGTGAAAGAAAATA TGAAAATAAAATTAAAAAGATTAAAAATTTCGACCAATTATTAAATACATCTATAAATAGTATGTTTTCACATGATTATA GAGAAATTATAATATATGTACCAAATAATGTAGACATAAATGCATCAAGTATAAGCTCACACTTATTTGTATACGATAAT GTAGCTTCAAATACTATAACATATAAAACTTCTTATGGAGGTTTTAGTAGAGCTATAACAGAGAACAAAGTAAATAGATT AGAAAACCTAAACTTAATATCTAATAACAATCTTCACTTGTCAACAAAATCAATTTTAGGCGTTAAAAATGTAAACATAG AATCAGAGTCATTGTATATATCTTCAGAGAATGAAGATGTATTTATCAATAATATAGAAGAGTATATACCTGAAAATGTA AATATAAAAGAGAAAATAGGTAGAAATTCAAATTATGAAAGTGAATTTTACTTGTACTCTGATATGCCAATTGCTAAGTT CCTGGACATAGAAGTTCCAAATTCTAAGGTAAGACTTGATATACCAGTAAATAAGTATAAATTTAATTGTGATATAAAGT CAAAAGAAGCAATTGAAGAATTTAATAATGATGAAGAATATGACAATGATTCATATGATTATGAACATAATGAAGAACAT AGCAACAAGTATAGAAATACGAGGGAAATAAAAGGGCTTTTGAATAAAAATCTGTCGAATTTAGAGAAAGAATATACTAT AAAAATAAATTCAAATAGCTTAGAATTGTAA
Upstream 100 bases:
>100_bases AGCATAAAAGAAACTGATGAATATAATGATGATAGTATAAATTTTGAGGCGATATATAAGGACCTTGAAGATATAGAAAA TAAGAAAGGAGAAGATAAAC
Downstream 100 bases:
>100_bases ATAATTTACTATAATAATTCATAAATTGATTTAAAAGTATAAAAATATAATCTATACTATGGTATAATAAGTATCGAAAG AGAATTAGGAGAGGGATACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 356; Mature: 356
Protein sequence:
>356_residues MNKKLAIFAAVLLVIGIIGTTWSGILVMPSLINFGLEKEAEFKKENKLYQEKVNIDKLDIAVDNINVTIKKSSSEDVRVT TRGNNEFYKYNVTLKDKTLVVKGERKYENKIKKIKNFDQLLNTSINSMFSHDYREIIIYVPNNVDINASSISSHLFVYDN VASNTITYKTSYGGFSRAITENKVNRLENLNLISNNNLHLSTKSILGVKNVNIESESLYISSENEDVFINNIEEYIPENV NIKEKIGRNSNYESEFYLYSDMPIAKFLDIEVPNSKVRLDIPVNKYKFNCDIKSKEAIEEFNNDEEYDNDSYDYEHNEEH SNKYRNTREIKGLLNKNLSNLEKEYTIKINSNSLEL
Sequences:
>Translated_356_residues MNKKLAIFAAVLLVIGIIGTTWSGILVMPSLINFGLEKEAEFKKENKLYQEKVNIDKLDIAVDNINVTIKKSSSEDVRVT TRGNNEFYKYNVTLKDKTLVVKGERKYENKIKKIKNFDQLLNTSINSMFSHDYREIIIYVPNNVDINASSISSHLFVYDN VASNTITYKTSYGGFSRAITENKVNRLENLNLISNNNLHLSTKSILGVKNVNIESESLYISSENEDVFINNIEEYIPENV NIKEKIGRNSNYESEFYLYSDMPIAKFLDIEVPNSKVRLDIPVNKYKFNCDIKSKEAIEEFNNDEEYDNDSYDYEHNEEH SNKYRNTREIKGLLNKNLSNLEKEYTIKINSNSLEL >Mature_356_residues MNKKLAIFAAVLLVIGIIGTTWSGILVMPSLINFGLEKEAEFKKENKLYQEKVNIDKLDIAVDNINVTIKKSSSEDVRVT TRGNNEFYKYNVTLKDKTLVVKGERKYENKIKKIKNFDQLLNTSINSMFSHDYREIIIYVPNNVDINASSISSHLFVYDN VASNTITYKTSYGGFSRAITENKVNRLENLNLISNNNLHLSTKSILGVKNVNIESESLYISSENEDVFINNIEEYIPENV NIKEKIGRNSNYESEFYLYSDMPIAKFLDIEVPNSKVRLDIPVNKYKFNCDIKSKEAIEEFNNDEEYDNDSYDYEHNEEH SNKYRNTREIKGLLNKNLSNLEKEYTIKINSNSLEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41168; Mature: 41168
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKLAIFAAVLLVIGIIGTTWSGILVMPSLINFGLEKEAEFKKENKLYQEKVNIDKLDI CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEE AVDNINVTIKKSSSEDVRVTTRGNNEFYKYNVTLKDKTLVVKGERKYENKIKKIKNFDQL EEECEEEEEEECCCCCEEEEECCCCEEEEEEEEEECCEEEEECCHHHHHHHHHHHHHHHH LNTSINSMFSHDYREIIIYVPNNVDINASSISSHLFVYDNVASNTITYKTSYGGFSRAIT HHHHHHHHHCCCCEEEEEECCCCCEEEHHHCCCEEEEEECCCCCEEEEEECCCCHHHHHH ENKVNRLENLNLISNNNLHLSTKSILGVKNVNIESESLYISSENEDVFINNIEEYIPENV HHHHHHHHCCEEEECCCEEEEHHHEEEEECCCCCCCEEEEECCCCEEEEECHHHHCCCCC NIKEKIGRNSNYESEFYLYSDMPIAKFLDIEVPNSKVRLDIPVNKYKFNCDIKSKEAIEE CHHHHHCCCCCCCCEEEEEECCCHHHEEEEECCCCEEEEEECCCEEEEEECCCCHHHHHH FNNDEEYDNDSYDYEHNEEHSNKYRNTREIKGLLNKNLSNLEKEYTIKINSNSLEL CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCHHCCCEEEEEEECCCCCCC >Mature Secondary Structure MNKKLAIFAAVLLVIGIIGTTWSGILVMPSLINFGLEKEAEFKKENKLYQEKVNIDKLDI CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEE AVDNINVTIKKSSSEDVRVTTRGNNEFYKYNVTLKDKTLVVKGERKYENKIKKIKNFDQL EEECEEEEEEECCCCCEEEEECCCCEEEEEEEEEECCEEEEECCHHHHHHHHHHHHHHHH LNTSINSMFSHDYREIIIYVPNNVDINASSISSHLFVYDNVASNTITYKTSYGGFSRAIT HHHHHHHHHCCCCEEEEEECCCCCEEEHHHCCCEEEEEECCCCCEEEEEECCCCHHHHHH ENKVNRLENLNLISNNNLHLSTKSILGVKNVNIESESLYISSENEDVFINNIEEYIPENV HHHHHHHHCCEEEECCCEEEEHHHEEEEECCCCCCCEEEEECCCCEEEEECHHHHCCCCC NIKEKIGRNSNYESEFYLYSDMPIAKFLDIEVPNSKVRLDIPVNKYKFNCDIKSKEAIEE CHHHHHCCCCCCCCEEEEEECCCHHHEEEEECCCCEEEEEECCCEEEEEECCCCHHHHHH FNNDEEYDNDSYDYEHNEEHSNKYRNTREIKGLLNKNLSNLEKEYTIKINSNSLEL CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCHHCCCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA