Click here to switch to the map view.

The map label for this gene is scpB

Identifier: 126698893

GI number: 126698893

Start: 1503125

End: 1503664

Strand: Direct

Name: scpB

Synonym: CD1296

Alternate gene names: 126698893

Gene position: 1503125-1503664 (Clockwise)

Preceding gene: 126698892

Following gene: 126698894

Centisome position: 35.04

GC content: 26.67

Gene sequence:

>540_bases
ATGAAAAGAGAAGATATAAAGTATATTATAGAATCTGTTATGTTTGCATATGGTGAGCCAATAAGTATAAAAGAATTAAA
CTATATAATAAATAAAGAACTTTCATCAAAAGAAATAGAGATTATGTTAAATTTACTTATTGAGGAGTACAGAGAACAAA
ATAGAGGTATTCAAATAATCAAGTTAGAGAATAAGTACCAAATGTGTACAAATAAAGACTATGCAGAATATATAAAGAAG
ATTATTGAACCAAAGAAAAAGAAAAGTTTGAGCCAAGCTACATTAGAAACTCTTACTATAATTGCCTACAAACAACCAAT
AACAAAGGTAGAAATAGAGGATATAAGAGGCGTAAAATGTGATAAGGTATTACAAACTTTGTTTGAAAATGAACTTATAA
GAGAAGCTGGTAGATTGAATAAGATAGGGAAACCAATAATTTATAAAACAACAGATGAATTTTTAAAGTTGTTGAATATA
GAAAGTCTTGAAGAATTGCCACCTATAGAAAATTATCAAGAAGTGGCAACAAATGAATAA

Upstream 100 bases:

>100_bases
TTTTTATCTATATTAGAGCTTATAAAAGAAAAAGAAATAGTCGTAGTACAAGATATATTTTTTGATGATATTCTAATAAG
AAAAAGTTCGGAGTGTTAAA

Downstream 100 bases:

>100_bases
AAATATAAAATCACAATAATTTAGTATGTAATTTTAAATTTTAAAAGATTTAAAATGCTCTAAGTTGTTGTGTTTTTTTG
TATAAATATAAAATTATAAT

Product: segregation and condensation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MKREDIKYIIESVMFAYGEPISIKELNYIINKELSSKEIEIMLNLLIEEYREQNRGIQIIKLENKYQMCTNKDYAEYIKK
IIEPKKKKSLSQATLETLTIIAYKQPITKVEIEDIRGVKCDKVLQTLFENELIREAGRLNKIGKPIIYKTTDEFLKLLNI
ESLEELPPIENYQEVATNE

Sequences:

>Translated_179_residues
MKREDIKYIIESVMFAYGEPISIKELNYIINKELSSKEIEIMLNLLIEEYREQNRGIQIIKLENKYQMCTNKDYAEYIKK
IIEPKKKKSLSQATLETLTIIAYKQPITKVEIEDIRGVKCDKVLQTLFENELIREAGRLNKIGKPIIYKTTDEFLKLLNI
ESLEELPPIENYQEVATNE
>Mature_179_residues
MKREDIKYIIESVMFAYGEPISIKELNYIINKELSSKEIEIMLNLLIEEYREQNRGIQIIKLENKYQMCTNKDYAEYIKK
IIEPKKKKSLSQATLETLTIIAYKQPITKVEIEDIRGVKCDKVLQTLFENELIREAGRLNKIGKPIIYKTTDEFLKLLNI
ESLEELPPIENYQEVATNE

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_CLOD6 (Q18BG3)

Other databases:

- EMBL:   AM180355
- RefSeq:   YP_001087790.1
- ProteinModelPortal:   Q18BG3
- SMR:   Q18BG3
- STRING:   Q18BG3
- GeneID:   4914011
- GenomeReviews:   AM180355_GR
- KEGG:   cdf:CD1296
- NMPDR:   fig|1496.1.peg.3438
- eggNOG:   COG1386
- HOGENOM:   HBG752450
- OMA:   REWIRIA
- ProtClustDB:   CLSK965958
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 21066; Mature: 21066

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKREDIKYIIESVMFAYGEPISIKELNYIINKELSSKEIEIMLNLLIEEYREQNRGIQII
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEE
KLENKYQMCTNKDYAEYIKKIIEPKKKKSLSQATLETLTIIAYKQPITKVEIEDIRGVKC
EECCCHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCH
DKVLQTLFENELIREAGRLNKIGKPIIYKTTDEFLKLLNIESLEELPPIENYQEVATNE
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCHHHHHHCCCCCCHHHHHCCC
>Mature Secondary Structure
MKREDIKYIIESVMFAYGEPISIKELNYIINKELSSKEIEIMLNLLIEEYREQNRGIQII
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEE
KLENKYQMCTNKDYAEYIKKIIEPKKKKSLSQATLETLTIIAYKQPITKVEIEDIRGVKC
EECCCHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCH
DKVLQTLFENELIREAGRLNKIGKPIIYKTTDEFLKLLNIESLEELPPIENYQEVATNE
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCHHHHHHCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA