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The map label for this gene is yqgF [C]

Identifier: 126698882

GI number: 126698882

Start: 1494089

End: 1494514

Strand: Direct

Name: yqgF [C]

Synonym: CD1285

Alternate gene names: 126698882

Gene position: 1494089-1494514 (Clockwise)

Preceding gene: 126698881

Following gene: 126698883

Centisome position: 34.83

GC content: 31.22

Gene sequence:

>426_bases
ATGTTAGATGGAAGAATAATGGGTCTTGATGTTGGTGATAAAACTATTGGAGTTGCTGTGAGTGATTTGATGGGATTAAC
TGCACAAGGTGTAAAAACAATAAAAAGAGTTGGCAAGAAAAAAGATATTGAAGAGCTAAAAGCAATAATAAAAGAAAAAC
AAGTAAATAAAATTGTATCAGGATTACCAAAAAATATGAATGGAACTTTAGGTCCACAAGGAGAAAAAGTAATCAAGTTT
TGTGAATTGGTAAAAGCAGAAACAGGTATTGATGTAGAGTTTTGGGATGAGAGGCTTTCTACAGTAGCGGCAGAGAGGTC
TTTATTAGAAGCAGATGTTAGTAGACAAAAAAGAAAAAAGGTTATAGATATGTTGGCAGCAGTAATAATTTTGCAAGGAT
ATTTAGATTTTAAAATAAATTCATAA

Upstream 100 bases:

>100_bases
TTATGTAAAATTATATGAAGCAGTAAGCCTGTGACCTTAGTTATGATAGGTTCAGAATATGTATTTAATCTATAGAATAT
AAATAGATAAAGGAGGAACT

Downstream 100 bases:

>100_bases
AAGAACTATAAAATTGAATACTTATGATATATAATATAAATAATAAAAATAAAAATAAATTTGAGGTGAATGACATTATG
GAAGAAAATATAATAAATTT

Product: holliday junction resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MLDGRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGLPKNMNGTLGPQGEKVIKF
CELVKAETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKVIDMLAAVIILQGYLDFKINS

Sequences:

>Translated_141_residues
MLDGRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGLPKNMNGTLGPQGEKVIKF
CELVKAETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKVIDMLAAVIILQGYLDFKINS
>Mature_141_residues
MLDGRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGLPKNMNGTLGPQGEKVIKF
CELVKAETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKVIDMLAAVIILQGYLDFKINS

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=36.2962962962963, Blast_Score=86, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_CLOD6 (Q18BF1)

Other databases:

- EMBL:   AM180355
- RefSeq:   YP_001087779.1
- ProteinModelPortal:   Q18BF1
- SMR:   Q18BF1
- STRING:   Q18BF1
- GeneID:   4913517
- GenomeReviews:   AM180355_GR
- KEGG:   cdf:CD1285
- NMPDR:   fig|1496.1.peg.4
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   CLSK2534786
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15500; Mature: 15500

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDGRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVS
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
GLPKNMNGTLGPQGEKVIKFCELVKAETGIDVEFWDERLSTVAAERSLLEADVSRQKRKK
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIDMLAAVIILQGYLDFKINS
HHHHHHHHHHHHHHHHCEECC
>Mature Secondary Structure
MLDGRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVS
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
GLPKNMNGTLGPQGEKVIKFCELVKAETGIDVEFWDERLSTVAAERSLLEADVSRQKRKK
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIDMLAAVIILQGYLDFKINS
HHHHHHHHHHHHHHHHCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA