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The map label for this gene is yrrO [H]

Identifier: 126698824

GI number: 126698824

Start: 1426332

End: 1427579

Strand: Direct

Name: yrrO [H]

Synonym: CD1228

Alternate gene names: 126698824

Gene position: 1426332-1427579 (Clockwise)

Preceding gene: 126698823

Following gene: 126698825

Centisome position: 33.25

GC content: 32.77

Gene sequence:

>1248_bases
ATGGAATTAAATAAAGTAGAACTTTTAGCTCCAGCAGGTGATTTGGAGAGATTGAAAATAGCTATAACATATGGAGCAGA
TGCCGTTTATATAGGTGGAGAAATTTTTGGAATGAGGTCTGCAGCGAAGAATTTTAGTAAGGAAGATATGGCAGAGGGAG
TAGCTTTTGCACATGAAAGAGGCAAGAAAGTATTCGTAACAGTAAATATAATACCTCATAATGAAGATTTTCTACAATTA
GAAGACTATTTGTTGGAACTAGAAGAGATAGGAATAGATGCAGTTATAATAGCTGACCCAGGAGTGCTTAGTGTCATTAA
AAAAGTAATTCCGAATATGGAAATACATTTAAGTACACAAGCAAATACAACCAATTATCTAAGTGCAAACTTCTGGTACG
AGCATGGAATAAAAAGAGTTGTAGTGGCAAGAGAATTATCTTTTGATGAAATATCTGAGATAAGAGCAAAAACACCTTTA
GATATGGATATAGAAGCGTTTATGCATGGTGCTATGTGTATTTCTTATTCTGGCAGATGTTTAATAAGCAACTATATGAC
TGGAAGAGATGCAAACAAAGGTTCTTGTGCTCAATCTTGTAGATGGCAATATCATTTGGTGGAAGAAAAAAGACCTGGTG
AGTATTTTCCAATATACGAAGATGAAAGGGGTACATTCTTCTTTAACTCAAAAGATTTATGTATGATAGAGTATATACCA
GAGTTAATCAAATCTGGTATAACAAGTTTAAAAATAGAAGGTAGAATGAAGACTGCATACTATGTAGCTACTGTTGTAAG
AGCATACAGAATGGCAATAGATGAATTTTACAGAGACCCAGAAAACTGGAAGTTCAATCCAATGTGGATGGAAGAACTAA
AAAAAGGTAGTCATAGACATTTTACATCAGGTTTTTACTTGAATAAACCAACAACAGAAGACCAAAATTATCAATCAGCA
TCATATGTTAGAAACTATGATTTTATAGGTATAGTTAGAGAAACAGAAGATGAAGATGGTCTTATTGTTGTTGAGCAAAG
AAATAAAATGTGTGTTGGTGATGAAATAGAAGTTATGGGACCATATAAAGAAACTATGTTTACTAAAATTGAAGAAATGT
ACAATGAAGAAGGAGAAGCTATAGAATCAGCTCCTCATCCTAGACAAATAGTGAAGTTAAAGCTATCAGTAAAAGTTGGT
AAAGATTATATGCTTAGAAAAGTTATAGAAGAAAAGGTTGAAGAATAA

Upstream 100 bases:

>100_bases
TTAGATTATATATGTAATTGTGACTATTTAAGCACATCATTGGTACCAATAGGTGATGGTGTAGCACTAAGTTATAAAGA
AAGTAAAAGAGGTGATGTAG

Downstream 100 bases:

>100_bases
TAAAAAATTGATAAAAATAGTATTAGCCCCTTAGAAATTGTCAATAATGAAATTATCTAAGGGGTGATTTCATGTCAAAA
AAGAAGACTCCATTTTTGAA

Product: protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MELNKVELLAPAGDLERLKIAITYGADAVYIGGEIFGMRSAAKNFSKEDMAEGVAFAHERGKKVFVTVNIIPHNEDFLQL
EDYLLELEEIGIDAVIIADPGVLSVIKKVIPNMEIHLSTQANTTNYLSANFWYEHGIKRVVVARELSFDEISEIRAKTPL
DMDIEAFMHGAMCISYSGRCLISNYMTGRDANKGSCAQSCRWQYHLVEEKRPGEYFPIYEDERGTFFFNSKDLCMIEYIP
ELIKSGITSLKIEGRMKTAYYVATVVRAYRMAIDEFYRDPENWKFNPMWMEELKKGSHRHFTSGFYLNKPTTEDQNYQSA
SYVRNYDFIGIVRETEDEDGLIVVEQRNKMCVGDEIEVMGPYKETMFTKIEEMYNEEGEAIESAPHPRQIVKLKLSVKVG
KDYMLRKVIEEKVEE

Sequences:

>Translated_415_residues
MELNKVELLAPAGDLERLKIAITYGADAVYIGGEIFGMRSAAKNFSKEDMAEGVAFAHERGKKVFVTVNIIPHNEDFLQL
EDYLLELEEIGIDAVIIADPGVLSVIKKVIPNMEIHLSTQANTTNYLSANFWYEHGIKRVVVARELSFDEISEIRAKTPL
DMDIEAFMHGAMCISYSGRCLISNYMTGRDANKGSCAQSCRWQYHLVEEKRPGEYFPIYEDERGTFFFNSKDLCMIEYIP
ELIKSGITSLKIEGRMKTAYYVATVVRAYRMAIDEFYRDPENWKFNPMWMEELKKGSHRHFTSGFYLNKPTTEDQNYQSA
SYVRNYDFIGIVRETEDEDGLIVVEQRNKMCVGDEIEVMGPYKETMFTKIEEMYNEEGEAIESAPHPRQIVKLKLSVKVG
KDYMLRKVIEEKVEE
>Mature_415_residues
MELNKVELLAPAGDLERLKIAITYGADAVYIGGEIFGMRSAAKNFSKEDMAEGVAFAHERGKKVFVTVNIIPHNEDFLQL
EDYLLELEEIGIDAVIIADPGVLSVIKKVIPNMEIHLSTQANTTNYLSANFWYEHGIKRVVVARELSFDEISEIRAKTPL
DMDIEAFMHGAMCISYSGRCLISNYMTGRDANKGSCAQSCRWQYHLVEEKRPGEYFPIYEDERGTFFFNSKDLCMIEYIP
ELIKSGITSLKIEGRMKTAYYVATVVRAYRMAIDEFYRDPENWKFNPMWMEELKKGSHRHFTSGFYLNKPTTEDQNYQSA
SYVRNYDFIGIVRETEDEDGLIVVEQRNKMCVGDEIEVMGPYKETMFTKIEEMYNEEGEAIESAPHPRQIVKLKLSVKVG
KDYMLRKVIEEKVEE

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1788397, Length=442, Percent_Identity=38.9140271493213, Blast_Score=283, Evalue=1e-77,
Organism=Escherichia coli, GI87081910, Length=271, Percent_Identity=40.9594095940959, Blast_Score=195, Evalue=4e-51,
Organism=Escherichia coli, GI1789548, Length=314, Percent_Identity=33.7579617834395, Blast_Score=177, Evalue=9e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 47782; Mature: 47782

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNKVELLAPAGDLERLKIAITYGADAVYIGGEIFGMRSAAKNFSKEDMAEGVAFAHER
CCCCCEEEEECCCCCEEEEEEEEECCCEEEECCEEEEHHHHHHCCCHHHHHHHHHHHHHC
GKKVFVTVNIIPHNEDFLQLEDYLLELEEIGIDAVIIADPGVLSVIKKVIPNMEIHLSTQ
CCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCEEEEEEC
ANTTNYLSANFWYEHGIKRVVVARELSFDEISEIRAKTPLDMDIEAFMHGAMCISYSGRC
CCCCCEEEECCHHHHCCEEEEEEECCCHHHHHHHHHCCCCCCCHHHHHCCCEEEECCCCE
LISNYMTGRDANKGSCAQSCRWQYHLVEEKRPGEYFPIYEDERGTFFFNSKDLCMIEYIP
EEEECCCCCCCCCCCHHHHCCEEEEEECCCCCCCCCCEEECCCCEEEECCCCEEHHHHHH
ELIKSGITSLKIEGRMKTAYYVATVVRAYRMAIDEFYRDPENWKFNPMWMEELKKGSHRH
HHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHCCCCCCE
FTSGFYLNKPTTEDQNYQSASYVRNYDFIGIVRETEDEDGLIVVEQRNKMCVGDEIEVMG
ECCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEECCCCCCEEEEECCCCEEECCCEEEEC
PYKETMFTKIEEMYNEEGEAIESAPHPRQIVKLKLSVKVGKDYMLRKVIEEKVEE
CHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEEEEEECHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELNKVELLAPAGDLERLKIAITYGADAVYIGGEIFGMRSAAKNFSKEDMAEGVAFAHER
CCCCCEEEEECCCCCEEEEEEEEECCCEEEECCEEEEHHHHHHCCCHHHHHHHHHHHHHC
GKKVFVTVNIIPHNEDFLQLEDYLLELEEIGIDAVIIADPGVLSVIKKVIPNMEIHLSTQ
CCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCEEEEEEC
ANTTNYLSANFWYEHGIKRVVVARELSFDEISEIRAKTPLDMDIEAFMHGAMCISYSGRC
CCCCCEEEECCHHHHCCEEEEEEECCCHHHHHHHHHCCCCCCCHHHHHCCCEEEECCCCE
LISNYMTGRDANKGSCAQSCRWQYHLVEEKRPGEYFPIYEDERGTFFFNSKDLCMIEYIP
EEEECCCCCCCCCCCHHHHCCEEEEEECCCCCCCCCCEEECCCCEEEECCCCEEHHHHHH
ELIKSGITSLKIEGRMKTAYYVATVVRAYRMAIDEFYRDPENWKFNPMWMEELKKGSHRH
HHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHCCCCCCE
FTSGFYLNKPTTEDQNYQSASYVRNYDFIGIVRETEDEDGLIVVEQRNKMCVGDEIEVMG
ECCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEECCCCCCEEEEECCCCEEECCCEEEEC
PYKETMFTKIEEMYNEEGEAIESAPHPRQIVKLKLSVKVGKDYMLRKVIEEKVEE
CHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEEEEEECHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]