Click here to switch to the map view.

The map label for this gene is nusB

Identifier: 126698797

GI number: 126698797

Start: 1400189

End: 1400698

Strand: Direct

Name: nusB

Synonym: CD1201

Alternate gene names: 126698797

Gene position: 1400189-1400698 (Clockwise)

Preceding gene: 126698796

Following gene: 126698798

Centisome position: 32.64

GC content: 24.9

Gene sequence:

>510_bases
TTGATGAAAAAAGATAGGGCACAAAAGAGTACAACAAGAGAATATATAATGAAACTTATATACCAAATAAATATTAATAA
AGAAGATTTTGAAACTTTAGAAGATAAAGTAGATAATTTTTTAAAAGATAATTCAGAACATATTATAAATAGATATAAAG
AACTTGCACTTCAATACTCAAAAAATACAAATTTAAAGTTAGAAGATACTGAAATTGAAGATGTTATAGACAAAAAATAT
ATAAATACAGTATGCAAAGCATTGAAAGAAAATCATGACAAAATAGATGAGTTAATAAATAAGCATGCTAAAAACTGGAC
AGTAGATAGAATGCCAAAGGTAGATGTTTCTATACTTAGATTGTCTGTGTGTGAAATACTTTATTTAGACACTCCTAATA
AAGTATCAATAAATGAAGCAGTAGAACTTGCAAAAATATATTGTGATGATAAGTCTCCTAAATTTATAAATGGTATATTG
GGAAGTGTTGTTGATGAAATTGGGAAATAA

Upstream 100 bases:

>100_bases
AGCAACTAAGAAAAATTAATATTAGCCCTCTGAAAAGTCAGAGGGTTTTTTGCTGGTAATTGATTTTATATGGATAATTA
AACTTAAAGGAGAATTTTGA

Downstream 100 bases:

>100_bases
TATAATAATTGGAATTGATACTAGCTGCTATACTACTTCTATAGCAGCTATCTCTTTAGATAAGAAAGTTATATTCAATG
AAAAAATAATGTTAGAAGTA

Product: N utilization substance protein B

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MMKKDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSKNTNLKLEDTEIEDVIDKKY
INTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSPKFINGIL
GSVVDEIGK

Sequences:

>Translated_169_residues
MMKKDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSKNTNLKLEDTEIEDVIDKKY
INTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSPKFINGIL
GSVVDEIGK
>Mature_169_residues
MMKKDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSKNTNLKLEDTEIEDVIDKKY
INTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSPKFINGIL
GSVVDEIGK

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_CLOD6 (Q18B61)

Other databases:

- EMBL:   AM180355
- RefSeq:   YP_001087694.1
- ProteinModelPortal:   Q18B61
- SMR:   Q18B61
- STRING:   Q18B61
- GeneID:   4913261
- GenomeReviews:   AM180355_GR
- KEGG:   cdf:CD1201
- NMPDR:   fig|1496.1.peg.194
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   GILANIE
- ProtClustDB:   CLSK2534736
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 19742; Mature: 19742

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYS
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
KNTNLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILR
CCCCCEEECCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LSVCEILYLDTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDEIGK
HHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMKKDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYS
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
KNTNLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILR
CCCCCEEECCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LSVCEILYLDTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDEIGK
HHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA