| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is spoIIIAB
Identifier: 126698789
GI number: 126698789
Start: 1395249
End: 1395770
Strand: Direct
Name: spoIIIAB
Synonym: CD1193
Alternate gene names: NA
Gene position: 1395249-1395770 (Clockwise)
Preceding gene: 126698788
Following gene: 126698790
Centisome position: 32.52
GC content: 24.9
Gene sequence:
>522_bases TTGCAAATTAAAATAATTATTATAGCTTTCTTGATAGGAAGTAGTTATTTGATAGGTGAACAAATATACAAAACTTATAC TCGTAGACATAAACAATTAAACGATTTAATAAGAGTTTTAGAAATTTTGAGGATGGATTTATCTTTTGGACTTTATACAT TAGAAGAAATCTTTAATAGGATAGGTGGAAATAAAGAGTTTTGTTTTTGGAAATTTTTCTATCAAATATCAGAAGGACTT CACAATGAACAAAGTAAAACTTTGGAAATAATAATATCAGAAAATATTGATGTCTTAAGTAAAGAAACTTATCTAGGCAA TAAAGAAATTGAGGAACTGAAAAATCTAATACTTACTTTAGGGAAAAGCGATATAGAGTCACAACAAAGAATGATAGATT TATCTATAGAAAATTTGAAAAAACAAACCTATGAGACAAAGGAAGATATAAACAAAAAAGGCGTATTGTATAAAAAATTA GTGACATTCATAGGTATAGGTATATGTATTATATTGATTTAA
Upstream 100 bases:
>100_bases CTGGATAAAGAGTTATTTAAAAAGGTTATAATTCTTTCTGCAAAAAGAGGAGCAGGAACAATTGAAAAAATTTATGATTT AGAAGAAAAGAGATGGTATT
Downstream 100 bases:
>100_bases TATGGGGAGGTTTATTATGGAAATATCATTGATATTAAAGGTTGCAGGTGTCGGTATTCTAATATCAGTATTGAATATGA TATTGGAAAAAACAGATAGA
Product: stage III sporulation protein AB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 173; Mature: 173
Protein sequence:
>173_residues MQIKIIIIAFLIGSSYLIGEQIYKTYTRRHKQLNDLIRVLEILRMDLSFGLYTLEEIFNRIGGNKEFCFWKFFYQISEGL HNEQSKTLEIIISENIDVLSKETYLGNKEIEELKNLILTLGKSDIESQQRMIDLSIENLKKQTYETKEDINKKGVLYKKL VTFIGIGICIILI
Sequences:
>Translated_173_residues MQIKIIIIAFLIGSSYLIGEQIYKTYTRRHKQLNDLIRVLEILRMDLSFGLYTLEEIFNRIGGNKEFCFWKFFYQISEGL HNEQSKTLEIIISENIDVLSKETYLGNKEIEELKNLILTLGKSDIESQQRMIDLSIENLKKQTYETKEDINKKGVLYKKL VTFIGIGICIILI >Mature_173_residues MQIKIIIIAFLIGSSYLIGEQIYKTYTRRHKQLNDLIRVLEILRMDLSFGLYTLEEIFNRIGGNKEFCFWKFFYQISEGL HNEQSKTLEIIISENIDVLSKETYLGNKEIEELKNLILTLGKSDIESQQRMIDLSIENLKKQTYETKEDINKKGVLYKKL VTFIGIGICIILI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20262; Mature: 20262
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIKIIIIAFLIGSSYLIGEQIYKTYTRRHKQLNDLIRVLEILRMDLSFGLYTLEEIFNR CEEEHEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGGNKEFCFWKFFYQISEGLHNEQSKTLEIIISENIDVLSKETYLGNKEIEELKNLILTL HCCCCCHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHH GKSDIESQQRMIDLSIENLKKQTYETKEDINKKGVLYKKLVTFIGIGICIILI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQIKIIIIAFLIGSSYLIGEQIYKTYTRRHKQLNDLIRVLEILRMDLSFGLYTLEEIFNR CEEEHEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGGNKEFCFWKFFYQISEGLHNEQSKTLEIIISENIDVLSKETYLGNKEIEELKNLILTL HCCCCCHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHH GKSDIESQQRMIDLSIENLKKQTYETKEDINKKGVLYKKLVTFIGIGICIILI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA