| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is spoIIIAA [H]
Identifier: 126698788
GI number: 126698788
Start: 1394291
End: 1395259
Strand: Direct
Name: spoIIIAA [H]
Synonym: CD1192
Alternate gene names: 126698788
Gene position: 1394291-1395259 (Clockwise)
Preceding gene: 126698787
Following gene: 126698789
Centisome position: 32.5
GC content: 28.9
Gene sequence:
>969_bases ATGAATAAACTTTCTGATGAAATAATAAACTCTCTTTCTACAACTATAAGAGAAAAGGTAGAAAAAGTCTCAAACAATAA TCTGAACATAGAAGAAATTAGGTTACGCTCACAAAAACCATTGATACTAAATGCAAACTCTAAAGATTATTTTTACAATC AAAAAACTATGACACTTGATTTAAATCAACAAAACTCATATGTAGTAACAAGAGAAGATGTAGAGCAAACTTTTCAAATA ATATGTAAATATTCAATACATTCATTTATGGATGACATAAAAAAAGGATTCATAACTTTGAGAGGAGGTCATAGAGTAGG GTTAGTTGGAAAAGCAATAGTAGAAGATGGACAAGTCAAAAATATAAAGCATATATCATCTTTAAATATAAGGGTATCAA GGGAAATTATTGGATGCTCGGATAAGATTTTAAGTCATATCATAAAGGGAAAAAATCAGATTAATAATACTTTGATAATA TCACCACCTCAATGTGGAAAAACAACTTTAATAAGAGATATAGTAAGAAATTTAAGTAATGGTAATGAAGATTATGGATT TAAAGGTTTAAAAGTGGCTTTAGTAGATGAGCGTAATGAGATAGCAGGAGCTTATCTAGGTGTTCCACAAATGGATGTGG GAATAAGGACTGATATAATAGAAACTTGCCCAAAAGACTTGGGTATTACAATGCTTTTAAGGTCTATGTCACCAAATGTT ATTGTGACAGATGAAATTGGAAGTGAAAAAGAAATAAAGGCATTATACACAGCATTAAATGGAGGTATAGGATTAATAAC TACTGTGCATGGAGATTCAATAGAGGATATACAAAATAGAAAAGAATTAAATAGACTTCTGGATAAAGAGTTATTTAAAA AGGTTATAATTCTTTCTGCAAAAAGAGGAGCAGGAACAATTGAAAAAATTTATGATTTAGAAGAAAAGAGATGGTATTTT GCAAATTAA
Upstream 100 bases:
>100_bases TTTTTTTATTTATAAACATTATTAAAAAAATATAGATGTTTTGGTTATATTCCTTGTCCTTTATAAATAGAATTATATAA ACAAAGGAGGAGGACAAGAG
Downstream 100 bases:
>100_bases AATAATTATTATAGCTTTCTTGATAGGAAGTAGTTATTTGATAGGTGAACAAATATACAAAACTTATACTCGTAGACATA AACAATTAAACGATTTAATA
Product: stage III sporulation protein AA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 322; Mature: 322
Protein sequence:
>322_residues MNKLSDEIINSLSTTIREKVEKVSNNNLNIEEIRLRSQKPLILNANSKDYFYNQKTMTLDLNQQNSYVVTREDVEQTFQI ICKYSIHSFMDDIKKGFITLRGGHRVGLVGKAIVEDGQVKNIKHISSLNIRVSREIIGCSDKILSHIIKGKNQINNTLII SPPQCGKTTLIRDIVRNLSNGNEDYGFKGLKVALVDERNEIAGAYLGVPQMDVGIRTDIIETCPKDLGITMLLRSMSPNV IVTDEIGSEKEIKALYTALNGGIGLITTVHGDSIEDIQNRKELNRLLDKELFKKVIILSAKRGAGTIEKIYDLEEKRWYF AN
Sequences:
>Translated_322_residues MNKLSDEIINSLSTTIREKVEKVSNNNLNIEEIRLRSQKPLILNANSKDYFYNQKTMTLDLNQQNSYVVTREDVEQTFQI ICKYSIHSFMDDIKKGFITLRGGHRVGLVGKAIVEDGQVKNIKHISSLNIRVSREIIGCSDKILSHIIKGKNQINNTLII SPPQCGKTTLIRDIVRNLSNGNEDYGFKGLKVALVDERNEIAGAYLGVPQMDVGIRTDIIETCPKDLGITMLLRSMSPNV IVTDEIGSEKEIKALYTALNGGIGLITTVHGDSIEDIQNRKELNRLLDKELFKKVIILSAKRGAGTIEKIYDLEEKRWYF AN >Mature_322_residues MNKLSDEIINSLSTTIREKVEKVSNNNLNIEEIRLRSQKPLILNANSKDYFYNQKTMTLDLNQQNSYVVTREDVEQTFQI ICKYSIHSFMDDIKKGFITLRGGHRVGLVGKAIVEDGQVKNIKHISSLNIRVSREIIGCSDKILSHIIKGKNQINNTLII SPPQCGKTTLIRDIVRNLSNGNEDYGFKGLKVALVDERNEIAGAYLGVPQMDVGIRTDIIETCPKDLGITMLLRSMSPNV IVTDEIGSEKEIKALYTALNGGIGLITTVHGDSIEDIQNRKELNRLLDKELFKKVIILSAKRGAGTIEKIYDLEEKRWYF AN
Specific function: Unknown
COG id: COG3854
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR014217 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36294; Mature: 36294
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKLSDEIINSLSTTIREKVEKVSNNNLNIEEIRLRSQKPLILNANSKDYFYNQKTMTLD CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEECCCCCEEEECCCCCEEECCEEEEEE LNQQNSYVVTREDVEQTFQIICKYSIHSFMDDIKKGFITLRGGHRVGLVGKAIVEDGQVK ECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCEEEEEHHHHHCCCCCC NIKHISSLNIRVSREIIGCSDKILSHIIKGKNQINNTLIISPPQCGKTTLIRDIVRNLSN CHHHHHHCCEEEEHHHHCCHHHHHHHHHHCCHHCCCEEEECCCCCCHHHHHHHHHHHHCC GNEDYGFKGLKVALVDERNEIAGAYLGVPQMDVGIRTDIIETCPKDLGITMLLRSMSPNV CCCCCCCCCEEEEEECCCCHHHHHEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCE IVTDEIGSEKEIKALYTALNGGIGLITTVHGDSIEDIQNRKELNRLLDKELFKKVIILSA EEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC KRGAGTIEKIYDLEEKRWYFAN CCCCCHHHHHHHHHHCCEECCC >Mature Secondary Structure MNKLSDEIINSLSTTIREKVEKVSNNNLNIEEIRLRSQKPLILNANSKDYFYNQKTMTLD CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEECCCCCEEEECCCCCEEECCEEEEEE LNQQNSYVVTREDVEQTFQIICKYSIHSFMDDIKKGFITLRGGHRVGLVGKAIVEDGQVK ECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCEEEEEHHHHHCCCCCC NIKHISSLNIRVSREIIGCSDKILSHIIKGKNQINNTLIISPPQCGKTTLIRDIVRNLSN CHHHHHHCCEEEEHHHHCCHHHHHHHHHHCCHHCCCEEEECCCCCCHHHHHHHHHHHHCC GNEDYGFKGLKVALVDERNEIAGAYLGVPQMDVGIRTDIIETCPKDLGITMLLRSMSPNV CCCCCCCCCEEEEEECCCCHHHHHEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCE IVTDEIGSEKEIKALYTALNGGIGLITTVHGDSIEDIQNRKELNRLLDKELFKKVIILSA EEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC KRGAGTIEKIYDLEEKRWYFAN CCCCCHHHHHHHHHHCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1766372; 8969508; 9384377 [H]