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The map label for this gene is rnfA [H]

Identifier: 126698735

GI number: 126698735

Start: 1339983

End: 1340558

Strand: Direct

Name: rnfA [H]

Synonym: CD1141

Alternate gene names: 126698735

Gene position: 1339983-1340558 (Clockwise)

Preceding gene: 126698734

Following gene: 126698736

Centisome position: 31.23

GC content: 30.9

Gene sequence:

>576_bases
ATGAATTTAATACTTTTATTTTTAAGTATCGTTCTTGTTAATAACGTTATAACATCTCAATTCTTGGGTATATGTCCTTT
CTTGGGAGTTTCTAAGAAGGTTGATACAGCAGTAGGGATGGGAGTTGCAGTTACGTTCGTTTTAACTCTAGCTTCAATTA
TAACTTATTTTATACAGATTTTATTAGTAAAAACTGGAACTGGATTCTTACAAACAATAGCTTTTATATTGGTTATAGCT
TCTATAGTTCAGTTCGTTGAAATGGTAATTCAAAAGATGAGTCCATCTTTATATCAAGCATTAGGAGTTTATTTACCTCT
TATAACTACAAACTGTGCAGTTCTTGGTATAGCTCTAGTTAATGTTCAAAAAAGTTATAATTTAGTAGAAACAATAATAA
ACGGATTTGGAGCCGGAGCTGGATTTACTTTAGCAATAGTAATATTCGCAGGTATAAGAGAAAGACTAGAATTAGCTGAT
ATACCAGAAGCATTTAAAGGTTTCCCTATAACGCTTATATCAGCAGGTTTAATGTCAATAGCTTTCTTAGGATTTACAGG
ACTTATAAAGCTATAA

Upstream 100 bases:

>100_bases
TAATATTTATATTACCACCAGGTGCATTCTTAACATTAGGATTCTTATTTGCAGGATTTAATAAATTAAGAAGTAAAAAA
GCATAGTGGAGGTGTAATAA

Downstream 100 bases:

>100_bases
AAAAGAGGGGTGAAAATGGTGATACTTACAGCTGTATTAGTTTTAGGAATTATGGGCTTAATCTTCGGGATAGTACTAGA
TTTTGCATCTAAAAAGTTTG

Product: electron transport complex protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MNLILLFLSIVLVNNVITSQFLGICPFLGVSKKVDTAVGMGVAVTFVLTLASIITYFIQILLVKTGTGFLQTIAFILVIA
SIVQFVEMVIQKMSPSLYQALGVYLPLITTNCAVLGIALVNVQKSYNLVETIINGFGAGAGFTLAIVIFAGIRERLELAD
IPEAFKGFPITLISAGLMSIAFLGFTGLIKL

Sequences:

>Translated_191_residues
MNLILLFLSIVLVNNVITSQFLGICPFLGVSKKVDTAVGMGVAVTFVLTLASIITYFIQILLVKTGTGFLQTIAFILVIA
SIVQFVEMVIQKMSPSLYQALGVYLPLITTNCAVLGIALVNVQKSYNLVETIINGFGAGAGFTLAIVIFAGIRERLELAD
IPEAFKGFPITLISAGLMSIAFLGFTGLIKL
>Mature_191_residues
MNLILLFLSIVLVNNVITSQFLGICPFLGVSKKVDTAVGMGVAVTFVLTLASIITYFIQILLVKTGTGFLQTIAFILVIA
SIVQFVEMVIQKMSPSLYQALGVYLPLITTNCAVLGIALVNVQKSYNLVETIINGFGAGAGFTLAIVIFAGIRERLELAD
IPEAFKGFPITLISAGLMSIAFLGFTGLIKL

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=191, Percent_Identity=56.5445026178011, Blast_Score=222, Evalue=1e-59,
Organism=Escherichia coli, GI1787919, Length=141, Percent_Identity=31.2056737588652, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20381; Mature: 20381

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLILLFLSIVLVNNVITSQFLGICPFLGVSKKVDTAVGMGVAVTFVLTLASIITYFIQI
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLVKTGTGFLQTIAFILVIASIVQFVEMVIQKMSPSLYQALGVYLPLITTNCAVLGIALV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
NVQKSYNLVETIINGFGAGAGFTLAIVIFAGIRERLELADIPEAFKGFPITLISAGLMSI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHH
AFLGFTGLIKL
HHHHHHHHHCC
>Mature Secondary Structure
MNLILLFLSIVLVNNVITSQFLGICPFLGVSKKVDTAVGMGVAVTFVLTLASIITYFIQI
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLVKTGTGFLQTIAFILVIASIVQFVEMVIQKMSPSLYQALGVYLPLITTNCAVLGIALV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
NVQKSYNLVETIINGFGAGAGFTLAIVIFAGIRERLELADIPEAFKGFPITLISAGLMSI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHH
AFLGFTGLIKL
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA