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The map label for this gene is rnfE [H]

Identifier: 126698734

GI number: 126698734

Start: 1339375

End: 1339968

Strand: Direct

Name: rnfE [H]

Synonym: CD1140

Alternate gene names: 126698734

Gene position: 1339375-1339968 (Clockwise)

Preceding gene: 126698733

Following gene: 126698735

Centisome position: 31.22

GC content: 31.14

Gene sequence:

>594_bases
ATGAATTTAGCTAAAGTATTTAAAAATGGGCTAATAGATGAGAACCCAACATTTGTTCAAGTTATAGGTATGTGTCCAAC
ACTAGCCGTTACAACTTCAGCAATAAATGGAATTGGTATGGGTCTTTCAACAGCAGCAGTTTTAATATGTGCAAATTTAG
TTATATCTTTAATAAGAAAAATTACACCAGATAAGATAAGAATACCTATATTTATAGTAGTTATAGCTACATTTGTTACA
ATAGTAGGTATGCTTTTAAAAGCATATGTTCCTGCTCTTGATAAGGCTCTTGGTATATATATACCATTAATAGTTGTTAA
CTGTTTAATATTAGCTCGTGCAGAAAGTTTTGCTTTCAAAACAGGAGCTATGCCTTCAATAGTTGATGGTGTAGGTCAAG
GTCTTGGATTTACTGTTGCACTTACAATAATAGGTGCAGTAAGAGAATTACTTGGAAATGGTAGTTTATTTGGAATGACA
TTATTTGGAGCATCTTTCCAACCAGTATTAATATTTATATTACCACCAGGTGCATTCTTAACATTAGGATTCTTATTTGC
AGGATTTAATAAATTAAGAAGTAAAAAAGCATAG

Upstream 100 bases:

>100_bases
AATATCAGGTGCAACTATTACATCTACAGCAGTTACTACAGGAGTAAATGCTGCTATAGATGTTTTCAATAGTGCTCTTA
ATAAATAAGGAGGGTTAATT

Downstream 100 bases:

>100_bases
TGGAGGTGTAATAAATGAATTTAATACTTTTATTTTTAAGTATCGTTCTTGTTAATAACGTTATAACATCTCAATTCTTG
GGTATATGTCCTTTCTTGGG

Product: electron transport complex protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MNLAKVFKNGLIDENPTFVQVIGMCPTLAVTTSAINGIGMGLSTAAVLICANLVISLIRKITPDKIRIPIFIVVIATFVT
IVGMLLKAYVPALDKALGIYIPLIVVNCLILARAESFAFKTGAMPSIVDGVGQGLGFTVALTIIGAVRELLGNGSLFGMT
LFGASFQPVLIFILPPGAFLTLGFLFAGFNKLRSKKA

Sequences:

>Translated_197_residues
MNLAKVFKNGLIDENPTFVQVIGMCPTLAVTTSAINGIGMGLSTAAVLICANLVISLIRKITPDKIRIPIFIVVIATFVT
IVGMLLKAYVPALDKALGIYIPLIVVNCLILARAESFAFKTGAMPSIVDGVGQGLGFTVALTIIGAVRELLGNGSLFGMT
LFGASFQPVLIFILPPGAFLTLGFLFAGFNKLRSKKA
>Mature_197_residues
MNLAKVFKNGLIDENPTFVQVIGMCPTLAVTTSAINGIGMGLSTAAVLICANLVISLIRKITPDKIRIPIFIVVIATFVT
IVGMLLKAYVPALDKALGIYIPLIVVNCLILARAESFAFKTGAMPSIVDGVGQGLGFTVALTIIGAVRELLGNGSLFGMT
LFGASFQPVLIFILPPGAFLTLGFLFAGFNKLRSKKA

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=200, Percent_Identity=44, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1787914, Length=145, Percent_Identity=31.0344827586207, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20731; Mature: 20731

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLAKVFKNGLIDENPTFVQVIGMCPTLAVTTSAINGIGMGLSTAAVLICANLVISLIRK
CCHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
ITPDKIRIPIFIVVIATFVTIVGMLLKAYVPALDKALGIYIPLIVVNCLILARAESFAFK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TGAMPSIVDGVGQGLGFTVALTIIGAVRELLGNGSLFGMTLFGASFQPVLIFILPPGAFL
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCEEEEEECCHHHH
TLGFLFAGFNKLRSKKA
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNLAKVFKNGLIDENPTFVQVIGMCPTLAVTTSAINGIGMGLSTAAVLICANLVISLIRK
CCHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
ITPDKIRIPIFIVVIATFVTIVGMLLKAYVPALDKALGIYIPLIVVNCLILARAESFAFK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TGAMPSIVDGVGQGLGFTVALTIIGAVRELLGNGSLFGMTLFGASFQPVLIFILPPGAFL
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCEEEEEECCHHHH
TLGFLFAGFNKLRSKKA
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA