Click here to switch to the map view.

The map label for this gene is 126698720

Identifier: 126698720

GI number: 126698720

Start: 1325502

End: 1325699

Strand: Direct

Name: 126698720

Synonym: CD1126A

Alternate gene names: NA

Gene position: 1325502-1325699 (Clockwise)

Preceding gene: 126698719

Following gene: 126698721

Centisome position: 30.9

GC content: 28.79

Gene sequence:

>198_bases
GTGAAAAATAGATTAGAAGAAATAAGAAAAGAAAGAGGCATAAAACAAGAAGAACTTGCTTCTATTTTGCAAGTATCAAG
ACAAACTATAGGTTCATTAGAAAATGGTAGGTATAATCCTTCTATCATCTTAGCCTTTAAGATAGCTAGATACTTTGATA
TGAGTATTGAAGAAATATTTATTTATGAGGAGGAGTAA

Upstream 100 bases:

>100_bases
TTTTTGTAAATATGGAAAGTAAGCTTTACATAAATGGAATATAGTTGTATAATTATGGAAAGTAGACTTTCCGTAGTTGA
GATATTAAAGGGGGATAGAT

Downstream 100 bases:

>100_bases
AAATGAAAAAGAATATGTTATATGTTGGAATTATATATTTTATTTGTGGAATTTTACTTGTTTTATTGGCTACATTTACT
GAGTTTTCATTTGAGGCTTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MKNRLEEIRKERGIKQEELASILQVSRQTIGSLENGRYNPSIILAFKIARYFDMSIEEIFIYEEE

Sequences:

>Translated_65_residues
MKNRLEEIRKERGIKQEELASILQVSRQTIGSLENGRYNPSIILAFKIARYFDMSIEEIFIYEEE
>Mature_65_residues
MKNRLEEIRKERGIKQEELASILQVSRQTIGSLENGRYNPSIILAFKIARYFDMSIEEIFIYEEE

Specific function: Unknown

COG id: COG1476

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 7738; Mature: 7738

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNRLEEIRKERGIKQEELASILQVSRQTIGSLENGRYNPSIILAFKIARYFDMSIEEIF
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHEE
IYEEE
EEECC
>Mature Secondary Structure
MKNRLEEIRKERGIKQEELASILQVSRQTIGSLENGRYNPSIILAFKIARYFDMSIEEIF
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHEE
IYEEE
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]