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The map label for this gene is ydeE [H]

Identifier: 126698719

GI number: 126698719

Start: 1324444

End: 1325310

Strand: Direct

Name: ydeE [H]

Synonym: CD1126

Alternate gene names: 126698719

Gene position: 1324444-1325310 (Clockwise)

Preceding gene: 126698718

Following gene: 126698720

Centisome position: 30.87

GC content: 32.64

Gene sequence:

>867_bases
ATGGAATGGATAAATAAATTAAATCAAGCTATTACTTATATTGAAGAAAATCTCGAAAGTGGAGTGGATTATGCAGAAGC
AGCAAAAATTGCATGTTGTTCAACCTTTCATTTTCAAAGAATGTTTTCATATATTGCAGAAGTACCATTATCTGAATATA
TTAGACGAAGACGTATGACTAAGGCTGCATTTGAACTTCAGAACAGTAACATCAAAATTTTAGAACTATCTGAGAAGTAT
GGTTACGATTCACCAACATCTTTTAATAGAGCTTTTCAAAATATACATAACATTTCTCCATCTGCAGCTAGAGCAAAGGG
TGTTGTTTTAAAAGCATATCCTAAGATGACATTAAGCATTTATGTAAAAGGAAATATAGAAATGCAATATCGTATTGTAG
AAAAGAAAGGGTTTCGTATTGTTGGTATAAAAGAAAGTATGAACATGATTGTAGAAGAGTGCTTTGAGAAAGTTCCTAAG
TTGTGGGCTAAATGCATAAAAAATGGAACAATTGATAAACTTTCAGAGTTAATAAATAATGAACCTTGTGGATTGCTTGG
AGTTAGTGTGTGTACAAATAGTAAGGGTTTAGATTATTATATTGCTGCTCCAACAGATAAGCCTGTATTAGAAGATACTC
ATGAATACTTAATACCATCAGGCACATGGGCAGTATTTGAATGTGTTTCTCCAATGCCAAATGCTCTGGCAATACAGGAA
TTGCAAAAAAGAATTATTACTGAGTGGTTACCAAGTTCTGGGTATGTGTATGCTAATTTACCAGATATTGAACTTTATCC
CAATGGCGATATCAATGCTCCTGATTATACTACAGAAGTTTGGATTCCAATTCAGAAACCAAGTTAA

Upstream 100 bases:

>100_bases
TTGAAAAATACTTATGAATTTAAATGCTTACAATTTTGTGCATGAATAGAGAGGTATATTATTTTATTAAACTGTATAAT
TTGCTTGGAGGTAATATCAA

Downstream 100 bases:

>100_bases
AATTAATAAATAATATGGAATTAATAAATAACATTAAAATTAATAAACAACATGAAATTCTAAAATTACAGGCTGAAAAT
AGTCTGTTATTTTTTTGTAA

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MEWINKLNQAITYIEENLESGVDYAEAAKIACCSTFHFQRMFSYIAEVPLSEYIRRRRMTKAAFELQNSNIKILELSEKY
GYDSPTSFNRAFQNIHNISPSAARAKGVVLKAYPKMTLSIYVKGNIEMQYRIVEKKGFRIVGIKESMNMIVEECFEKVPK
LWAKCIKNGTIDKLSELINNEPCGLLGVSVCTNSKGLDYYIAAPTDKPVLEDTHEYLIPSGTWAVFECVSPMPNALAIQE
LQKRIITEWLPSSGYVYANLPDIELYPNGDINAPDYTTEVWIPIQKPS

Sequences:

>Translated_288_residues
MEWINKLNQAITYIEENLESGVDYAEAAKIACCSTFHFQRMFSYIAEVPLSEYIRRRRMTKAAFELQNSNIKILELSEKY
GYDSPTSFNRAFQNIHNISPSAARAKGVVLKAYPKMTLSIYVKGNIEMQYRIVEKKGFRIVGIKESMNMIVEECFEKVPK
LWAKCIKNGTIDKLSELINNEPCGLLGVSVCTNSKGLDYYIAAPTDKPVLEDTHEYLIPSGTWAVFECVSPMPNALAIQE
LQKRIITEWLPSSGYVYANLPDIELYPNGDINAPDYTTEVWIPIQKPS
>Mature_288_residues
MEWINKLNQAITYIEENLESGVDYAEAAKIACCSTFHFQRMFSYIAEVPLSEYIRRRRMTKAAFELQNSNIKILELSEKY
GYDSPTSFNRAFQNIHNISPSAARAKGVVLKAYPKMTLSIYVKGNIEMQYRIVEKKGFRIVGIKESMNMIVEECFEKVPK
LWAKCIKNGTIDKLSELINNEPCGLLGVSVCTNSKGLDYYIAAPTDKPVLEDTHEYLIPSGTWAVFECVSPMPNALAIQE
LQKRIITEWLPSSGYVYANLPDIELYPNGDINAPDYTTEVWIPIQKPS

Specific function: May Be A Transcriptional Activator Of Genes Involved In The Multiple Antibiotic Resistance (Mar) Phenotype. It Can Also Activate Genes Such As Soda, Zwf And Micf. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=35.7142857142857, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32736; Mature: 32736

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWINKLNQAITYIEENLESGVDYAEAAKIACCSTFHFQRMFSYIAEVPLSEYIRRRRMT
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
KAAFELQNSNIKILELSEKYGYDSPTSFNRAFQNIHNISPSAARAKGVVLKAYPKMTLSI
HHHHHHCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHCCCCCHHHHCCEEEEECCCEEEEE
YVKGNIEMQYRIVEKKGFRIVGIKESMNMIVEECFEKVPKLWAKCIKNGTIDKLSELINN
EEEECEEEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
EPCGLLGVSVCTNSKGLDYYIAAPTDKPVLEDTHEYLIPSGTWAVFECVSPMPNALAIQE
CCCCEEEEEEECCCCCCEEEEECCCCCCCHHCCHHHCCCCCCHHHHHHHCCCCCHHHHHH
LQKRIITEWLPSSGYVYANLPDIELYPNGDINAPDYTTEVWIPIQKPS
HHHHHHHHHCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MEWINKLNQAITYIEENLESGVDYAEAAKIACCSTFHFQRMFSYIAEVPLSEYIRRRRMT
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
KAAFELQNSNIKILELSEKYGYDSPTSFNRAFQNIHNISPSAARAKGVVLKAYPKMTLSI
HHHHHHCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHCCCCCHHHHCCEEEEECCCEEEEE
YVKGNIEMQYRIVEKKGFRIVGIKESMNMIVEECFEKVPKLWAKCIKNGTIDKLSELINN
EEEECEEEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
EPCGLLGVSVCTNSKGLDYYIAAPTDKPVLEDTHEYLIPSGTWAVFECVSPMPNALAIQE
CCCCEEEEEEECCCCCCEEEEECCCCCCCHHCCHHHCCCCCCHHHHHHHCCCCCHHHHHH
LQKRIITEWLPSSGYVYANLPDIELYPNGDINAPDYTTEVWIPIQKPS
HHHHHHHHHCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]