| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698506
Identifier: 126698506
GI number: 126698506
Start: 1104178
End: 1105173
Strand: Direct
Name: 126698506
Synonym: CD0929
Alternate gene names: NA
Gene position: 1104178-1105173 (Clockwise)
Preceding gene: 126698505
Following gene: 126698507
Centisome position: 25.74
GC content: 26.41
Gene sequence:
>996_bases ATGATAATGCACAAATTTATAATACATGTTTTAGATAAGAATAGTGATACACCAATATTGAATGATTTTGAAGGTAGGGT TAATCAAGATATGGTCCTATTTTTTCAAAAGAAAATAAGCAAAGTATCAAGAGATAATGATATCAGAACAGCAGTATTTA ATGACTATAGTAACAATCTAATTAAGAAGTGTTGTGAACAAATTATTTATGATGAAAGTTCATTTTTAAATAACTCTAAA GAGATTGCAGCTTATTTATTTGATGTTATGAAGCTTAATGCTACATTAGAATCTTGCGACTTATCAATTTGCTTATACTC TCAAAAAGATGAAAAGAAAGTTGCTATATTAAAGCTTGATTACAATAATTCGTATACTCATTCAATTGAGTTTAAAGATG ATAAATTTAATATACAGATGTCTAAAAATGAAATTAATATACAAGAGACTAAAGCAATTAAAATTGGTGCATTGATTGGA TTAAGTGGAATTAATGACGAATATCATCTAAAAGTATTGGATAAAGATGCAGAGAAGGAAGAAGCTAATTCTAAGTTTGT TACAGAGTTTCTAAATGCTACTAAAGTGAAAGATGATAAGTATAAGACTAAGATGTTTAAAGCTTTTGTGGACTCTTATA TAGCACATTTATATAGTGATATGAAGCAGGGCGAAGATGTAAGAGGAATGTTACTTTATATGTTAAGAGAAAAACAAAAA CTTGATATAAATGAGTTTGCTGATAAGGCGATAAAGGATGATTTAAAAGATAGTTTTAAGGACCATATAGAAGAAAAAGG GATTGAAAGTTTTAATATTGATAAAAAATGGGTTGAAAAGAATTTAAAAAATAGACATATAAAAACGGATACAGGTTTTG AGATAAAAGGTAAAATGGAGGATTTTGAGGATTTTATGAAATATGGTATTAGACATAATGGAAATGGAACTGTAGATATA GTTATTAAAAATGTTAATTTATATAATGAGAAGTAG
Upstream 100 bases:
>100_bases ATATAGTACTAATAACTATAGATAAGGTAGATGAAGTTATAAAAAATACTATAAGCGAGAAGATTATAGAACGCTTTAAA AATTTATAAGGGGTGAAATT
Downstream 100 bases:
>100_bases GTGCTCATATGAAATATGTAGCTAGTTTTAGTGGAGGAAAAGATTCAGCAGCAATGCTCCTTTTAATATTAGAAAAAAGG CTTCTGTTAGACGAGATTGT
Product: phage protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 331; Mature: 331
Protein sequence:
>331_residues MIMHKFIIHVLDKNSDTPILNDFEGRVNQDMVLFFQKKISKVSRDNDIRTAVFNDYSNNLIKKCCEQIIYDESSFLNNSK EIAAYLFDVMKLNATLESCDLSICLYSQKDEKKVAILKLDYNNSYTHSIEFKDDKFNIQMSKNEINIQETKAIKIGALIG LSGINDEYHLKVLDKDAEKEEANSKFVTEFLNATKVKDDKYKTKMFKAFVDSYIAHLYSDMKQGEDVRGMLLYMLREKQK LDINEFADKAIKDDLKDSFKDHIEEKGIESFNIDKKWVEKNLKNRHIKTDTGFEIKGKMEDFEDFMKYGIRHNGNGTVDI VIKNVNLYNEK
Sequences:
>Translated_331_residues MIMHKFIIHVLDKNSDTPILNDFEGRVNQDMVLFFQKKISKVSRDNDIRTAVFNDYSNNLIKKCCEQIIYDESSFLNNSK EIAAYLFDVMKLNATLESCDLSICLYSQKDEKKVAILKLDYNNSYTHSIEFKDDKFNIQMSKNEINIQETKAIKIGALIG LSGINDEYHLKVLDKDAEKEEANSKFVTEFLNATKVKDDKYKTKMFKAFVDSYIAHLYSDMKQGEDVRGMLLYMLREKQK LDINEFADKAIKDDLKDSFKDHIEEKGIESFNIDKKWVEKNLKNRHIKTDTGFEIKGKMEDFEDFMKYGIRHNGNGTVDI VIKNVNLYNEK >Mature_331_residues MIMHKFIIHVLDKNSDTPILNDFEGRVNQDMVLFFQKKISKVSRDNDIRTAVFNDYSNNLIKKCCEQIIYDESSFLNNSK EIAAYLFDVMKLNATLESCDLSICLYSQKDEKKVAILKLDYNNSYTHSIEFKDDKFNIQMSKNEINIQETKAIKIGALIG LSGINDEYHLKVLDKDAEKEEANSKFVTEFLNATKVKDDKYKTKMFKAFVDSYIAHLYSDMKQGEDVRGMLLYMLREKQK LDINEFADKAIKDDLKDSFKDHIEEKGIESFNIDKKWVEKNLKNRHIKTDTGFEIKGKMEDFEDFMKYGIRHNGNGTVDI VIKNVNLYNEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38663; Mature: 38663
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIMHKFIIHVLDKNSDTPILNDFEGRVNQDMVLFFQKKISKVSRDNDIRTAVFNDYSNNL CCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHH IKKCCEQIIYDESSFLNNSKEIAAYLFDVMKLNATLESCDLSICLYSQKDEKKVAILKLD HHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCHHHHCCEEEEEECCCCCCEEEEEEEE YNNSYTHSIEFKDDKFNIQMSKNEINIQETKAIKIGALIGLSGINDEYHLKVLDKDAEKE CCCCEEEEEEECCCEEEEEECCCCCCEEHHCEEEEEEEEEECCCCCCEEEEEECCCCCHH EANSKFVTEFLNATKVKDDKYKTKMFKAFVDSYIAHLYSDMKQGEDVRGMLLYMLREKQK HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC LDINEFADKAIKDDLKDSFKDHIEEKGIESFNIDKKWVEKNLKNRHIKTDTGFEIKGKME CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCHH DFEDFMKYGIRHNGNGTVDIVIKNVNLYNEK HHHHHHHHCCEECCCCEEEEEEEECCCCCCC >Mature Secondary Structure MIMHKFIIHVLDKNSDTPILNDFEGRVNQDMVLFFQKKISKVSRDNDIRTAVFNDYSNNL CCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHH IKKCCEQIIYDESSFLNNSKEIAAYLFDVMKLNATLESCDLSICLYSQKDEKKVAILKLD HHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCHHHHCCEEEEEECCCCCCEEEEEEEE YNNSYTHSIEFKDDKFNIQMSKNEINIQETKAIKIGALIGLSGINDEYHLKVLDKDAEKE CCCCEEEEEEECCCEEEEEECCCCCCEEHHCEEEEEEEEEECCCCCCEEEEEECCCCCHH EANSKFVTEFLNATKVKDDKYKTKMFKAFVDSYIAHLYSDMKQGEDVRGMLLYMLREKQK HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC LDINEFADKAIKDDLKDSFKDHIEEKGIESFNIDKKWVEKNLKNRHIKTDTGFEIKGKME CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCHH DFEDFMKYGIRHNGNGTVDIVIKNVNLYNEK HHHHHHHHCCEECCCCEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA