| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698493
Identifier: 126698493
GI number: 126698493
Start: 1097768
End: 1098283
Strand: Direct
Name: 126698493
Synonym: CD0916
Alternate gene names: NA
Gene position: 1097768-1098283 (Clockwise)
Preceding gene: 126698492
Following gene: 126698494
Centisome position: 25.59
GC content: 27.13
Gene sequence:
>516_bases ATGAGTACTTTATATGAATTAACTACAGATTTATTAGAAATAGAAGAAGGTTTAACAGAAATAACAGGAAATGAAGCTGA AAAACTAGAGGAAATAAAAGAAATAATAAAACAAGAGATACAAAATAAAAACACTAGAATAGTGTCAGTAATAATAAATA TCGATAGTGATATAAACTCTATAGATTCAGAGATTAAAAGATTACAAGAGTTAAAGAGGGTCAAAAAGAATACTATTGAT AGATTAAAAAGCAATATAAAAGACTGTATGGAATTACTTGGGACTAAAAAAGTAGAAACAATTTTAGGAAACATAAGTAT AAGAAAGTCAGCAGGTAGCTTAGTCATAGAAGATGAGGAAAAGATACCTGCTATATATAAAACAGTAGAGCAAGTTGTAA AAGTAGATAAAAATAGTATTAAAGACTTTATTAAAAAAGGTCATGAGGTTGAAGGTTGCAGGATTGAATATGGAACTACA CTAACAATTCCAAAAGCTAAAAAAGAGGTGAATTAA
Upstream 100 bases:
>100_bases TAGATGTGCAGATATAAGAAAAGAGCCTATAGCGAGGCTCAATTCAAAAATAGAAGTAAAAAATTTATTAAAATAATTAT AGCATAAACGGAGGGAAATT
Downstream 100 bases:
>100_bases TATGAATAACAAGGCTTTAGAATTAGCAACATGTACCTTAGAATCAGGTCAAATACTTGATTACATGACAGTAAAGAATT ACTTAGTAAGTGGAAATGGA
Product: phage protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MSTLYELTTDLLEIEEGLTEITGNEAEKLEEIKEIIKQEIQNKNTRIVSVIINIDSDINSIDSEIKRLQELKRVKKNTID RLKSNIKDCMELLGTKKVETILGNISIRKSAGSLVIEDEEKIPAIYKTVEQVVKVDKNSIKDFIKKGHEVEGCRIEYGTT LTIPKAKKEVN
Sequences:
>Translated_171_residues MSTLYELTTDLLEIEEGLTEITGNEAEKLEEIKEIIKQEIQNKNTRIVSVIINIDSDINSIDSEIKRLQELKRVKKNTID RLKSNIKDCMELLGTKKVETILGNISIRKSAGSLVIEDEEKIPAIYKTVEQVVKVDKNSIKDFIKKGHEVEGCRIEYGTT LTIPKAKKEVN >Mature_170_residues STLYELTTDLLEIEEGLTEITGNEAEKLEEIKEIIKQEIQNKNTRIVSVIINIDSDINSIDSEIKRLQELKRVKKNTIDR LKSNIKDCMELLGTKKVETILGNISIRKSAGSLVIEDEEKIPAIYKTVEQVVKVDKNSIKDFIKKGHEVEGCRIEYGTTL TIPKAKKEVN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19429; Mature: 19298
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLYELTTDLLEIEEGLTEITGNEAEKLEEIKEIIKQEIQNKNTRIVSVIINIDSDINS CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHH IDSEIKRLQELKRVKKNTIDRLKSNIKDCMELLGTKKVETILGNISIRKSAGSLVIEDEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEECCCCCEEEECCH KIPAIYKTVEQVVKVDKNSIKDFIKKGHEVEGCRIEYGTTLTIPKAKKEVN HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCEEECCCHHCCCC >Mature Secondary Structure STLYELTTDLLEIEEGLTEITGNEAEKLEEIKEIIKQEIQNKNTRIVSVIINIDSDINS CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHH IDSEIKRLQELKRVKKNTIDRLKSNIKDCMELLGTKKVETILGNISIRKSAGSLVIEDEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEECCCCCEEEECCH KIPAIYKTVEQVVKVDKNSIKDFIKKGHEVEGCRIEYGTTLTIPKAKKEVN HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCEEECCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA