| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is ydcP [H]
Identifier: 126698282
GI number: 126698282
Start: 855339
End: 857939
Strand: Direct
Name: ydcP [H]
Synonym: CD0703
Alternate gene names: 126698282
Gene position: 855339-857939 (Clockwise)
Preceding gene: 126698281
Following gene: 126698283
Centisome position: 19.94
GC content: 30.07
Gene sequence:
>2601_bases ATGAAAAAAATAGAATTACTTGCACCAGTAGGCTCTTTTGATTCATTAAAAGCAGCAGTTCAAAACGGAGCAAATGCTGT GTATTTAGGTGGTAAAGACTTTAGTGCTAGAGCATCTGCAAATAACTTTGATAGAAATGAGCTGATTGAGGCTGTTAAAT ACTCTCATATAAGGGGAGTGCAAGTCTTTGTTACTGTAAATACATTGATAAAACAGTATGAAATAGAAGATTTTGTAGAG TATGTAAAATTTTTATACGATATAGATATTGATGCTTTAATAGTACAGGATATAGGAATGGCAAGACTTATAAAAAAACT ATTACCTGACTTTGAACTACATGCAAGCACTCAAATGGTAGCACATTCCTTAGAAGATGTAAAATACCTTCAGAGTGTAG GGTTTGATAGAGTTGTTTTAGCAAGAGAATTAAATGTTGATGAGATAAAATGGATTTGTGAAAATACAACTGTAGATATA GAAGTTTTTGTACATGGAGCTTTATGTGTATGTTACTCGGGTCAATGCCTTATGAGTAGTATGATAGGCAATAGGTCTGG AAATAGAGGTAGGTGTGCACAGCCATGTAGACAAAAGTATGAGTTGATAGATATAAATACAGGAGAAGTAGTAAAAAGTA ATGGAGATTATTTGTTGAGTCCTAGAGATTTAAGTACTATAGAAGATTTGGATAAAATAATTGAAGCAGGTGTATTATCT TTAAAAATTGAAGGTAGAATGAAAAAGCCAGAGTATGTAGCTACTGTGGTTTCAGGATATAGAGAAGCGATTAATGAATT TGTAGATAAGAAAAAAATAAGTATTTCTGAGGAAATAATAAATAATTTGTATACCATATTTAATAGAAAGTTTACAAAAG GATATATATTAGGTGAAGTTGGTAAGGATATAATGAACTCTAATAGACCTAATAATCAAGGGCTATATATTGGAAAAGTT TTAGATTATAATAGAAAGAACAAAAGACTTAGAGTAATGCTAGAAAATACGCTTAAGAAAGGTGATGGAATTAACTTAGG TGGAGGTACTATTGGAAGAATAATAAAGGATGGAGAGATAACTACAATAGCACATAAAGGGGATTTGATAGAATTAGATT TTGTTGGAGAAGCAAAGAGAAATCAGCTTATATATAAGACTTCTGACAGCGAATTAATGGATAGAGTACAAGCTACATTT CAGCAAGATAAAGAGTTCATAAAAACTAATATACGTGCAAAAGTGAGTATTAAACTAGGTAAAAAGCCAGAGCTTTTTAT AAGTGATTTTTGTGGAAATAAATCGGTGGTAGAAGGAGACAAAATAGTTGAAAAAGCTATAAAGGTGGCTTTAAGTAAAG AAAAAATAGAAACACAAATTCAAAAGCTTGGAAATACACCATATAAGTTAAAAGAGATAGAAATTGACCTGGATGAAGGT GTAAGTATGCCTATAAGTGTGTTAAATCAAATGAGAAGGGATTGTATTGAGCTTTTAGATGAAGAAAGAATAAAGATAAA AGATAGAAAATTTAAGAAGAATAGATTAAAATACCAGCCAAATAGAGTAAATAAACAGAAAAAACTTGATACAGTTCCTA AGATTAGAGTTAAAGTTAAGAACTTGGAGCAATTAGAAGCAGTATTAAATTATAATGTAGATTTAATCTATTATGAAGAT ATAAATACATTATCAAAAGCTTTACAAATGGTCTCAAGTATTTCTATAGATTCAAATATTTCTATAGATTCAAGTATTTC TATGGATTTAGATACTTCTTCGTCTTTAGGTACTCCTAAAGAACTAATGGGTTCAAATACAAATAACATAGATACTTTGT CAAATACAAGTAAAATAGATACTTTGAATAAGAATCACTATAATACAGCAGTCACTGACAAAAAATTAATCTATTCAGCA CCAAGGATTGTTAGAAATAAAGAGTACAAGCAATTTGAGATATTGGATAATATAAAAGGAATTAATAAGGTTCAAATTGG TAACTGGGGCTCTATGGAATACTTTAAGAAAAAAGACTTAAATATAGATTGCTACTTAAATGCATTCAATAGTGAAAGTA TAAACCACTTCAAAGAAGAGGGAGCAAGTACAGTTTGTTTGTCACAAGAACTAAACTTAAATGAAATTAAACAAACTTTA AAATATACAGATGTAGAAATTGAAGCAGTAATATATGGATATGCTCCTATGATGGTTACAGAATACTGTCCTATGGGAGT AGTTGTTAGGGATTGTAAAAAGGACAAGAGAGTTGCTAAATGTAAGGAAAGTAGTTATGCTTTAAGAGACTTTACGGATG CAAGTTATAGGATAACACAAGATATATTCTGTAGAAGTACAATTTACAATTCGAAGGTTACTTGTATGTTGGACAATCTA TATGAGTTAGAGGAAATTGGAATAGATGTATTTAGGATAGATTTTACAGTTGAAGATAGTGAGATGGTTAAAAAGGTTAT TGAAGCTCACATTGAGGTATTGAGTAATAATTATAAACTTGGAAAAAAGGCTACAGACTTGTATAAGAAATTAGATGAAA TTGGAACAGTTGCAGGACACTACTATAAAGGTGTAGAATAG
Upstream 100 bases:
>100_bases AGAATTTAAAATATAGTAAGAAATATATAAATTTAATACAAATATTTAAGTTATAGATATAATTATATTAACCTAACAAG TATAAATAGAGGAGAAAAAT
Downstream 100 bases:
>100_bases ATATAACATGAAAAATATACATGAATATATATAAAAACTTGAATTTATGTGTATTAATATATAAAAATATCATATATGTG AAAAAACAGGGGGATTGGTG
Product: protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 866; Mature: 866
Protein sequence:
>866_residues MKKIELLAPVGSFDSLKAAVQNGANAVYLGGKDFSARASANNFDRNELIEAVKYSHIRGVQVFVTVNTLIKQYEIEDFVE YVKFLYDIDIDALIVQDIGMARLIKKLLPDFELHASTQMVAHSLEDVKYLQSVGFDRVVLARELNVDEIKWICENTTVDI EVFVHGALCVCYSGQCLMSSMIGNRSGNRGRCAQPCRQKYELIDINTGEVVKSNGDYLLSPRDLSTIEDLDKIIEAGVLS LKIEGRMKKPEYVATVVSGYREAINEFVDKKKISISEEIINNLYTIFNRKFTKGYILGEVGKDIMNSNRPNNQGLYIGKV LDYNRKNKRLRVMLENTLKKGDGINLGGGTIGRIIKDGEITTIAHKGDLIELDFVGEAKRNQLIYKTSDSELMDRVQATF QQDKEFIKTNIRAKVSIKLGKKPELFISDFCGNKSVVEGDKIVEKAIKVALSKEKIETQIQKLGNTPYKLKEIEIDLDEG VSMPISVLNQMRRDCIELLDEERIKIKDRKFKKNRLKYQPNRVNKQKKLDTVPKIRVKVKNLEQLEAVLNYNVDLIYYED INTLSKALQMVSSISIDSNISIDSSISMDLDTSSSLGTPKELMGSNTNNIDTLSNTSKIDTLNKNHYNTAVTDKKLIYSA PRIVRNKEYKQFEILDNIKGINKVQIGNWGSMEYFKKKDLNIDCYLNAFNSESINHFKEEGASTVCLSQELNLNEIKQTL KYTDVEIEAVIYGYAPMMVTEYCPMGVVVRDCKKDKRVAKCKESSYALRDFTDASYRITQDIFCRSTIYNSKVTCMLDNL YELEEIGIDVFRIDFTVEDSEMVKKVIEAHIEVLSNNYKLGKKATDLYKKLDEIGTVAGHYYKGVE
Sequences:
>Translated_866_residues MKKIELLAPVGSFDSLKAAVQNGANAVYLGGKDFSARASANNFDRNELIEAVKYSHIRGVQVFVTVNTLIKQYEIEDFVE YVKFLYDIDIDALIVQDIGMARLIKKLLPDFELHASTQMVAHSLEDVKYLQSVGFDRVVLARELNVDEIKWICENTTVDI EVFVHGALCVCYSGQCLMSSMIGNRSGNRGRCAQPCRQKYELIDINTGEVVKSNGDYLLSPRDLSTIEDLDKIIEAGVLS LKIEGRMKKPEYVATVVSGYREAINEFVDKKKISISEEIINNLYTIFNRKFTKGYILGEVGKDIMNSNRPNNQGLYIGKV LDYNRKNKRLRVMLENTLKKGDGINLGGGTIGRIIKDGEITTIAHKGDLIELDFVGEAKRNQLIYKTSDSELMDRVQATF QQDKEFIKTNIRAKVSIKLGKKPELFISDFCGNKSVVEGDKIVEKAIKVALSKEKIETQIQKLGNTPYKLKEIEIDLDEG VSMPISVLNQMRRDCIELLDEERIKIKDRKFKKNRLKYQPNRVNKQKKLDTVPKIRVKVKNLEQLEAVLNYNVDLIYYED INTLSKALQMVSSISIDSNISIDSSISMDLDTSSSLGTPKELMGSNTNNIDTLSNTSKIDTLNKNHYNTAVTDKKLIYSA PRIVRNKEYKQFEILDNIKGINKVQIGNWGSMEYFKKKDLNIDCYLNAFNSESINHFKEEGASTVCLSQELNLNEIKQTL KYTDVEIEAVIYGYAPMMVTEYCPMGVVVRDCKKDKRVAKCKESSYALRDFTDASYRITQDIFCRSTIYNSKVTCMLDNL YELEEIGIDVFRIDFTVEDSEMVKKVIEAHIEVLSNNYKLGKKATDLYKKLDEIGTVAGHYYKGVE >Mature_866_residues MKKIELLAPVGSFDSLKAAVQNGANAVYLGGKDFSARASANNFDRNELIEAVKYSHIRGVQVFVTVNTLIKQYEIEDFVE YVKFLYDIDIDALIVQDIGMARLIKKLLPDFELHASTQMVAHSLEDVKYLQSVGFDRVVLARELNVDEIKWICENTTVDI EVFVHGALCVCYSGQCLMSSMIGNRSGNRGRCAQPCRQKYELIDINTGEVVKSNGDYLLSPRDLSTIEDLDKIIEAGVLS LKIEGRMKKPEYVATVVSGYREAINEFVDKKKISISEEIINNLYTIFNRKFTKGYILGEVGKDIMNSNRPNNQGLYIGKV LDYNRKNKRLRVMLENTLKKGDGINLGGGTIGRIIKDGEITTIAHKGDLIELDFVGEAKRNQLIYKTSDSELMDRVQATF QQDKEFIKTNIRAKVSIKLGKKPELFISDFCGNKSVVEGDKIVEKAIKVALSKEKIETQIQKLGNTPYKLKEIEIDLDEG VSMPISVLNQMRRDCIELLDEERIKIKDRKFKKNRLKYQPNRVNKQKKLDTVPKIRVKVKNLEQLEAVLNYNVDLIYYED INTLSKALQMVSSISIDSNISIDSSISMDLDTSSSLGTPKELMGSNTNNIDTLSNTSKIDTLNKNHYNTAVTDKKLIYSA PRIVRNKEYKQFEILDNIKGINKVQIGNWGSMEYFKKKDLNIDCYLNAFNSESINHFKEEGASTVCLSQELNLNEIKQTL KYTDVEIEAVIYGYAPMMVTEYCPMGVVVRDCKKDKRVAKCKESSYALRDFTDASYRITQDIFCRSTIYNSKVTCMLDNL YELEEIGIDVFRIDFTVEDSEMVKKVIEAHIEVLSNNYKLGKKATDLYKKLDEIGTVAGHYYKGVE
Specific function: Unknown
COG id: COG0826
COG function: function code O; Collagenase and related proteases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase U32 family [H]
Homologues:
Organism=Escherichia coli, GI87081910, Length=565, Percent_Identity=32.212389380531, Blast_Score=248, Evalue=1e-66, Organism=Escherichia coli, GI1788397, Length=398, Percent_Identity=29.8994974874372, Blast_Score=168, Evalue=1e-42, Organism=Escherichia coli, GI1789548, Length=295, Percent_Identity=33.8983050847458, Blast_Score=139, Evalue=1e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020988 - InterPro: IPR001539 [H]
Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]
EC number: 3.4.-.- [C]
Molecular weight: Translated: 98398; Mature: 98398
Theoretical pI: Translated: 7.55; Mature: 7.55
Prosite motif: PS01276 PEPTIDASE_U32
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIELLAPVGSFDSLKAAVQNGANAVYLGGKDFSARASANNFDRNELIEAVKYSHIRGV CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCE QVFVTVNTLIKQYEIEDFVEYVKFLYDIDIDALIVQDIGMARLIKKLLPDFELHASTQMV EEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHH AHSLEDVKYLQSVGFDRVVLARELNVDEIKWICENTTVDIEVFVHGALCVCYSGQCLMSS HHHHHHHHHHHHCCCCEEEEEECCCHHHHHEEECCCEEEEEEEEECEEEEEECCHHHHHH MIGNRSGNRGRCAQPCRQKYELIDINTGEVVKSNGDYLLSPRDLSTIEDLDKIIEAGVLS HHCCCCCCCCCCCHHHHCCCEEEECCCCCEEECCCCEEECCCCCHHHHHHHHHHHCCEEE LKIEGRMKKPEYVATVVSGYREAINEFVDKKKISISEEIINNLYTIFNRKFTKGYILGEV EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEHHH GKDIMNSNRPNNQGLYIGKVLDYNRKNKRLRVMLENTLKKGDGINLGGGTIGRIIKDGEI HHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHCCCCCCCCCCCHHHHEEECCCE TTIAHKGDLIELDFVGEAKRNQLIYKTSDSELMDRVQATFQQDKEFIKTNIRAKVSIKLG EEEEECCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEC KKPELFISDFCGNKSVVEGDKIVEKAIKVALSKEKIETQIQKLGNTPYKLKEIEIDLDEG CCCCEEHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC VSMPISVLNQMRRDCIELLDEERIKIKDRKFKKNRLKYQPNRVNKQKKLDTVPKIRVKVK CCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCCHHHHCCCCCCEEEECC NLEQLEAVLNYNVDLIYYEDINTLSKALQMVSSISIDSNISIDSSISMDLDTSSSLGTPK CHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCH ELMGSNTNNIDTLSNTSKIDTLNKNHYNTAVTDKKLIYSAPRIVRNKEYKQFEILDNIKG HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHCCCCCHHHHHHHHCCC INKVQIGNWGSMEYFKKKDLNIDCYLNAFNSESINHFKEEGASTVCLSQELNLNEIKQTL CCEEEECCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHH KYTDVEIEAVIYGYAPMMVTEYCPMGVVVRDCKKDKRVAKCKESSYALRDFTDASYRITQ HHCCEEEEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEHH DIFCRSTIYNSKVTCMLDNLYELEEIGIDVFRIDFTVEDSEMVKKVIEAHIEVLSNNYKL HHHHHHHHCCCEEEEEEHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCC GKKATDLYKKLDEIGTVAGHYYKGVE CCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKKIELLAPVGSFDSLKAAVQNGANAVYLGGKDFSARASANNFDRNELIEAVKYSHIRGV CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCE QVFVTVNTLIKQYEIEDFVEYVKFLYDIDIDALIVQDIGMARLIKKLLPDFELHASTQMV EEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHH AHSLEDVKYLQSVGFDRVVLARELNVDEIKWICENTTVDIEVFVHGALCVCYSGQCLMSS HHHHHHHHHHHHCCCCEEEEEECCCHHHHHEEECCCEEEEEEEEECEEEEEECCHHHHHH MIGNRSGNRGRCAQPCRQKYELIDINTGEVVKSNGDYLLSPRDLSTIEDLDKIIEAGVLS HHCCCCCCCCCCCHHHHCCCEEEECCCCCEEECCCCEEECCCCCHHHHHHHHHHHCCEEE LKIEGRMKKPEYVATVVSGYREAINEFVDKKKISISEEIINNLYTIFNRKFTKGYILGEV EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEHHH GKDIMNSNRPNNQGLYIGKVLDYNRKNKRLRVMLENTLKKGDGINLGGGTIGRIIKDGEI HHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHCCCCCCCCCCCHHHHEEECCCE TTIAHKGDLIELDFVGEAKRNQLIYKTSDSELMDRVQATFQQDKEFIKTNIRAKVSIKLG EEEEECCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEC KKPELFISDFCGNKSVVEGDKIVEKAIKVALSKEKIETQIQKLGNTPYKLKEIEIDLDEG CCCCEEHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC VSMPISVLNQMRRDCIELLDEERIKIKDRKFKKNRLKYQPNRVNKQKKLDTVPKIRVKVK CCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCCHHHHCCCCCCEEEECC NLEQLEAVLNYNVDLIYYEDINTLSKALQMVSSISIDSNISIDSSISMDLDTSSSLGTPK CHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCH ELMGSNTNNIDTLSNTSKIDTLNKNHYNTAVTDKKLIYSAPRIVRNKEYKQFEILDNIKG HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHCCCCCHHHHHHHHCCC INKVQIGNWGSMEYFKKKDLNIDCYLNAFNSESINHFKEEGASTVCLSQELNLNEIKQTL CCEEEECCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHH KYTDVEIEAVIYGYAPMMVTEYCPMGVVVRDCKKDKRVAKCKESSYALRDFTDASYRITQ HHCCEEEEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEHH DIFCRSTIYNSKVTCMLDNLYELEEIGIDVFRIDFTVEDSEMVKKVIEAHIEVLSNNYKL HHHHHHHHCCCEEEEEEHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCC GKKATDLYKKLDEIGTVAGHYYKGVE CCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]