| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698281
Identifier: 126698281
GI number: 126698281
Start: 854087
End: 854770
Strand: Direct
Name: 126698281
Synonym: CD0702
Alternate gene names: NA
Gene position: 854087-854770 (Clockwise)
Preceding gene: 126698280
Following gene: 126698282
Centisome position: 19.91
GC content: 26.32
Gene sequence:
>684_bases ATGACAAGCAAGAGTCAGATGTCTGAATCATTCTTTTTATGTTCTTTGTTGGCAATAACAGGAGGATTTTTGGATATTTA TACTTATGTGGTAAGAGGTAAAGTCTTTGCTAATGCACAAACTGGAAATATAGTTTTATTTGGGCTTAATATAGCAGAAG GTAATGTAAAGGAATCATTTTATTATTTGATTCCTATTTTGGCATTTATGTTAGGTGTATTTATAGCCGAGAAGATAAGA AAGTATTTTACAAATAATAAGACAAAGATTCATTGGCGTCAGGTTATCATTATAATTGAAATGATTACAATACTTATTGT TTCATTTATTCCTAGAGGAAGATTTAATATGTTTGTAAATGTTGCTATTTCTTTTATTTGTTCAATGCAAGTAGAGAGTT TTAGAAAAGTAAATGGGAATAGTTTTGCAACGACAATGTGTACTGGAAATTTAAGAAGTGCTACAGAAACTTTATTTCAT TATATACATACTAAGAATATTTTTATGATAAAAAAGAGTTTACAGTATTATGCTATTATTATATTCTTTATATCTGGAGC TATTTTAGGAACTTTTTTTACAAAAATTTTCGTGGAAAAATCAATACTAATATGTTTTTTTATTTTGGCAGTGGTCTTTG GAATTATGTTTATCAATAAAGATGATTCATTTAATGAAAATTAA
Upstream 100 bases:
>100_bases GACAATATTTAAATATAAATAATTTTTTTATATCAATGAAAAATAGAATCTAAAATGATTTTGATTTTGTATCTATCATT AGAAAGCGAGAGGTTTATAT
Downstream 100 bases:
>100_bases CTTTCTGTAAATTTACAAAAAAATGAAGCTGTTATTTGATATACTTTATATATAGCAAATATTGTATAGATTAATTAAAG AATTTAAAATATAGTAAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MTSKSQMSESFFLCSLLAITGGFLDIYTYVVRGKVFANAQTGNIVLFGLNIAEGNVKESFYYLIPILAFMLGVFIAEKIR KYFTNNKTKIHWRQVIIIIEMITILIVSFIPRGRFNMFVNVAISFICSMQVESFRKVNGNSFATTMCTGNLRSATETLFH YIHTKNIFMIKKSLQYYAIIIFFISGAILGTFFTKIFVEKSILICFFILAVVFGIMFINKDDSFNEN
Sequences:
>Translated_227_residues MTSKSQMSESFFLCSLLAITGGFLDIYTYVVRGKVFANAQTGNIVLFGLNIAEGNVKESFYYLIPILAFMLGVFIAEKIR KYFTNNKTKIHWRQVIIIIEMITILIVSFIPRGRFNMFVNVAISFICSMQVESFRKVNGNSFATTMCTGNLRSATETLFH YIHTKNIFMIKKSLQYYAIIIFFISGAILGTFFTKIFVEKSILICFFILAVVFGIMFINKDDSFNEN >Mature_226_residues TSKSQMSESFFLCSLLAITGGFLDIYTYVVRGKVFANAQTGNIVLFGLNIAEGNVKESFYYLIPILAFMLGVFIAEKIRK YFTNNKTKIHWRQVIIIIEMITILIVSFIPRGRFNMFVNVAISFICSMQVESFRKVNGNSFATTMCTGNLRSATETLFHY IHTKNIFMIKKSLQYYAIIIFFISGAILGTFFTKIFVEKSILICFFILAVVFGIMFINKDDSFNEN
Specific function: Unknown
COG id: COG3619
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25966; Mature: 25835
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSKSQMSESFFLCSLLAITGGFLDIYTYVVRGKVFANAQTGNIVLFGLNIAEGNVKESF CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEECCCCCCEEEEEEEECCCCHHHHH YYLIPILAFMLGVFIAEKIRKYFTNNKTKIHWRQVIIIIEMITILIVSFIPRGRFNMFVN HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH VAISFICSMQVESFRKVNGNSFATTMCTGNLRSATETLFHYIHTKNIFMIKKSLQYYAII HHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH IFFISGAILGTFFTKIFVEKSILICFFILAVVFGIMFINKDDSFNEN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC >Mature Secondary Structure TSKSQMSESFFLCSLLAITGGFLDIYTYVVRGKVFANAQTGNIVLFGLNIAEGNVKESF CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEECCCCCCEEEEEEEECCCCHHHHH YYLIPILAFMLGVFIAEKIRKYFTNNKTKIHWRQVIIIIEMITILIVSFIPRGRFNMFVN HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH VAISFICSMQVESFRKVNGNSFATTMCTGNLRSATETLFHYIHTKNIFMIKKSLQYYAII HHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH IFFISGAILGTFFTKIFVEKSILICFFILAVVFGIMFINKDDSFNEN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA