| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698258
Identifier: 126698258
GI number: 126698258
Start: 821646
End: 822653
Strand: Direct
Name: 126698258
Synonym: CD0679
Alternate gene names: NA
Gene position: 821646-822653 (Clockwise)
Preceding gene: 126698257
Following gene: 126698259
Centisome position: 19.15
GC content: 33.73
Gene sequence:
>1008_bases ATGGGAAAATATCAGGATTCAAAAAAAGTTGTAAGAAATTATTTTGAAGCATTAGAAAATGCTACTGGGGATGAGGTTGA AAATGTCTTAAAGCAACATATGAAATCAGATTATAACTGGAAAGGTGTGTATCCATTTCGTGAACAAGAAGGCACTGAAA ATGTAGCAGATGTATTTTGGAAGCCTTTAAAAAAATCATTGAGTAATATGCAAAGACGACAAGATATTTTCATTGCAGGA ACAAATGAGATTGACAATAGTGAATGGGTAATGAGTATGGGGCATTTTATGGGACTTTTTGATAACGATTGGCTTGGCAT TAAACATACTCGTAAAATGATTAGTTTAAGATATGCAGAATTTAACTGTGTTCAAGATGGTAAAATTGCTAAAACTGGAT TATTTGTAGATATAATTGGGTTTATGATTCAAGCAGGAGTTAATCCATTGCCACCACAAACAGGTTCATATTTTGTATAT CCAGGGCCAATTGACCATAATGGATTACTTTTTGAAGATGCAGATGAAGTTGAAGGAGTAAAAACTTTAGCATTAGTAAA TAAAATGGTAGATGATTTATCTGAACTAAATGAAAGTGGTGCTATGGGATGCCCACCAGAAATACTTGAAAAATCTTGGG CTAAAGATATGATTTGGTATGGTCCAGGTGGAATTGGTGCTTCTTATACTATACCTAGATATCAAGAGCAACACCAGCTA CCATTTAGAAATAATTTAAAAGGAAAGACTTTCAATGGGCATGTATGTAGATTTGCAGAAGGTAATTTTGCTTGTTTCTT TGGATGGCCTAATCTGACTAATGTACCATGTGGAGGTTTTTTAGGATTACCAGGTGGAGAGGTTAAAGCAGATATGCAAG TTGTTGATGTTTATTATCGTAAGGGCGATAAACTTCAAGAAAACTGGGTGTTAATTGATATTCCTTATTGGTTGAAACAA CAAGGGCTTGATATTCTTGAGAGAACTAAAAGTATTTTTAATGCTTAG
Upstream 100 bases:
>100_bases AAATAAACTTAAAACAACTAAAAAATCATTAAAAAGGAAATCGTATGCATGAAATGAGAAAGTTAATTTATAACTTAAAT AAATCTGGGAGGAGATAATT
Downstream 100 bases:
>100_bases TTATGCATACGTATTCTGAAATAAAGGGGGATATAAAGTGGCATCTACCAACAAAAATAATGTAACAAGTAAAGAGGAAG AAAAAGAAGTTTCTACAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 335; Mature: 334
Protein sequence:
>335_residues MGKYQDSKKVVRNYFEALENATGDEVENVLKQHMKSDYNWKGVYPFREQEGTENVADVFWKPLKKSLSNMQRRQDIFIAG TNEIDNSEWVMSMGHFMGLFDNDWLGIKHTRKMISLRYAEFNCVQDGKIAKTGLFVDIIGFMIQAGVNPLPPQTGSYFVY PGPIDHNGLLFEDADEVEGVKTLALVNKMVDDLSELNESGAMGCPPEILEKSWAKDMIWYGPGGIGASYTIPRYQEQHQL PFRNNLKGKTFNGHVCRFAEGNFACFFGWPNLTNVPCGGFLGLPGGEVKADMQVVDVYYRKGDKLQENWVLIDIPYWLKQ QGLDILERTKSIFNA
Sequences:
>Translated_335_residues MGKYQDSKKVVRNYFEALENATGDEVENVLKQHMKSDYNWKGVYPFREQEGTENVADVFWKPLKKSLSNMQRRQDIFIAG TNEIDNSEWVMSMGHFMGLFDNDWLGIKHTRKMISLRYAEFNCVQDGKIAKTGLFVDIIGFMIQAGVNPLPPQTGSYFVY PGPIDHNGLLFEDADEVEGVKTLALVNKMVDDLSELNESGAMGCPPEILEKSWAKDMIWYGPGGIGASYTIPRYQEQHQL PFRNNLKGKTFNGHVCRFAEGNFACFFGWPNLTNVPCGGFLGLPGGEVKADMQVVDVYYRKGDKLQENWVLIDIPYWLKQ QGLDILERTKSIFNA >Mature_334_residues GKYQDSKKVVRNYFEALENATGDEVENVLKQHMKSDYNWKGVYPFREQEGTENVADVFWKPLKKSLSNMQRRQDIFIAGT NEIDNSEWVMSMGHFMGLFDNDWLGIKHTRKMISLRYAEFNCVQDGKIAKTGLFVDIIGFMIQAGVNPLPPQTGSYFVYP GPIDHNGLLFEDADEVEGVKTLALVNKMVDDLSELNESGAMGCPPEILEKSWAKDMIWYGPGGIGASYTIPRYQEQHQLP FRNNLKGKTFNGHVCRFAEGNFACFFGWPNLTNVPCGGFLGLPGGEVKADMQVVDVYYRKGDKLQENWVLIDIPYWLKQQ GLDILERTKSIFNA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38086; Mature: 37955
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKYQDSKKVVRNYFEALENATGDEVENVLKQHMKSDYNWKGVYPFREQEGTENVADVFW CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHH KPLKKSLSNMQRRQDIFIAGTNEIDNSEWVMSMGHFMGLFDNDWLGIKHTRKMISLRYAE HHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH FNCVQDGKIAKTGLFVDIIGFMIQAGVNPLPPQTGSYFVYPGPIDHNGLLFEDADEVEGV HCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCEECCCHHHHHH KTLALVNKMVDDLSELNESGAMGCPPEILEKSWAKDMIWYGPGGIGASYTIPRYQEQHQL HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHCCC PFRNNLKGKTFNGHVCRFAEGNFACFFGWPNLTNVPCGGFLGLPGGEVKADMQVVDVYYR CCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHH KGDKLQENWVLIDIPYWLKQQGLDILERTKSIFNA CCCCCCCCEEEEECCHHHHHCCHHHHHHHHHHHCC >Mature Secondary Structure GKYQDSKKVVRNYFEALENATGDEVENVLKQHMKSDYNWKGVYPFREQEGTENVADVFW CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHH KPLKKSLSNMQRRQDIFIAGTNEIDNSEWVMSMGHFMGLFDNDWLGIKHTRKMISLRYAE HHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH FNCVQDGKIAKTGLFVDIIGFMIQAGVNPLPPQTGSYFVYPGPIDHNGLLFEDADEVEGV HCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCEECCCHHHHHH KTLALVNKMVDDLSELNESGAMGCPPEILEKSWAKDMIWYGPGGIGASYTIPRYQEQHQL HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHCCC PFRNNLKGKTFNGHVCRFAEGNFACFFGWPNLTNVPCGGFLGLPGGEVKADMQVVDVYYR CCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHH KGDKLQENWVLIDIPYWLKQQGLDILERTKSIFNA CCCCCCCCEEEEECCHHHHHCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA