| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698232
Identifier: 126698232
GI number: 126698232
Start: 779194
End: 779832
Strand: Direct
Name: 126698232
Synonym: CD0654
Alternate gene names: NA
Gene position: 779194-779832 (Clockwise)
Preceding gene: 126698231
Following gene: 126698233
Centisome position: 18.16
GC content: 26.13
Gene sequence:
>639_bases ATGTTGATTCATTTAGTTAAAAAAGATATTCTGATTGTAAAAAAATATGTATTGTTGATATTGTTTATTGCAATAGGAAT CCCATTATTTATATTGTGGCGTTTACCTCCATTTGCACAAATATTGGGATTTGTACTATCCATTATATTTTCAGAATTTA TGCTGTGCCAGTATCTATTATTAAAGGAGAGTCAATATTCAAAAGCATCTGTATTACTTTGTTCAACTCCTTATCCTAGA CGTGGCTTAGTTCAATCTAAGTATGTTTTATTTGCAATGGTATTTATCTATTGTACATTAGTTTACTGGATTGAAAATTT ACTTATTCCACAAATAGGAACTTTTGACTTAACATATATTTTGATTGTTTTATTAATAAGTTCTATTATTTATGGAGTTT ATATGCCTATTCAATATAAATTAGGATATGAAACAACAAAATTCTTTTTCGTGGTGATAATCATGGCTTCATCATTTGTA TTACCATTAACTATAGCTCACAGCAATTTTGAAATTCCATTTATATATCAGTATCCATCCATGATAGTGAATATTGTATT GTTCCTTTTAAGTTTAATTATACTGTTAGCTTCAATGTTTATTTCTATTAAAATTTTTAGTAATAAGGAGCTTGTATAA
Upstream 100 bases:
>100_bases CAAAAATTAATGAAGTGCAAAAAAATATGCCAGATATTTTAATAGAGCGTCCTACAATTGAAGATATTATGCTTGCATAT ATTGAAAGGAGAGAGTAATT
Downstream 100 bases:
>100_bases GGTAAGGGGGACTTTTATATGCCACATTTACCAGATTGGGCTGTTTTACTTTGTATCTTACTTCCAATAGTATATAAAGC TTGTCAGATATTTAAAAGTA
Product: ABC transporter permease
Products: NA
Alternate protein names: ABC Transporter Permease Protein
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MLIHLVKKDILIVKKYVLLILFIAIGIPLFILWRLPPFAQILGFVLSIIFSEFMLCQYLLLKESQYSKASVLLCSTPYPR RGLVQSKYVLFAMVFIYCTLVYWIENLLIPQIGTFDLTYILIVLLISSIIYGVYMPIQYKLGYETTKFFFVVIIMASSFV LPLTIAHSNFEIPFIYQYPSMIVNIVLFLLSLIILLASMFISIKIFSNKELV
Sequences:
>Translated_212_residues MLIHLVKKDILIVKKYVLLILFIAIGIPLFILWRLPPFAQILGFVLSIIFSEFMLCQYLLLKESQYSKASVLLCSTPYPR RGLVQSKYVLFAMVFIYCTLVYWIENLLIPQIGTFDLTYILIVLLISSIIYGVYMPIQYKLGYETTKFFFVVIIMASSFV LPLTIAHSNFEIPFIYQYPSMIVNIVLFLLSLIILLASMFISIKIFSNKELV >Mature_212_residues MLIHLVKKDILIVKKYVLLILFIAIGIPLFILWRLPPFAQILGFVLSIIFSEFMLCQYLLLKESQYSKASVLLCSTPYPR RGLVQSKYVLFAMVFIYCTLVYWIENLLIPQIGTFDLTYILIVLLISSIIYGVYMPIQYKLGYETTKFFFVVIIMASSFV LPLTIAHSNFEIPFIYQYPSMIVNIVLFLLSLIILLASMFISIKIFSNKELV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24556; Mature: 24556
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIHLVKKDILIVKKYVLLILFIAIGIPLFILWRLPPFAQILGFVLSIIFSEFMLCQYLL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LKESQYSKASVLLCSTPYPRRGLVQSKYVLFAMVFIYCTLVYWIENLLIPQIGTFDLTYI HHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH LIVLLISSIIYGVYMPIQYKLGYETTKFFFVVIIMASSFVLPLTIAHSNFEIPFIYQYPS HHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHCCHHHEEEEECCCCCCEEEEHHHH MIVNIVLFLLSLIILLASMFISIKIFSNKELV HHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC >Mature Secondary Structure MLIHLVKKDILIVKKYVLLILFIAIGIPLFILWRLPPFAQILGFVLSIIFSEFMLCQYLL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LKESQYSKASVLLCSTPYPRRGLVQSKYVLFAMVFIYCTLVYWIENLLIPQIGTFDLTYI HHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH LIVLLISSIIYGVYMPIQYKLGYETTKFFFVVIIMASSFVLPLTIAHSNFEIPFIYQYPS HHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHCCHHHEEEEECCCCCCEEEEHHHH MIVNIVLFLLSLIILLASMFISIKIFSNKELV HHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA