| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698209
Identifier: 126698209
GI number: 126698209
Start: 755054
End: 755575
Strand: Direct
Name: 126698209
Synonym: CD0631
Alternate gene names: NA
Gene position: 755054-755575 (Clockwise)
Preceding gene: 126698206
Following gene: 126698210
Centisome position: 17.6
GC content: 30.08
Gene sequence:
>522_bases ATGGCTACAATAGATTTAATTGTATTGGGAATAGTAAAGCAACAACCCAAGAGTGCTTATGATATTCAAAAGGCAGTGGA ATACAGGAATATATCACGTTGGGTTAAAATAAGTACACCATCAATTTATAAAAAAGTAATTCAATTAGAACAAAAGGGAT ATATTGAAAGTAAAACTGTGAAGAATGGAAAAATGCCAGAAAAAGCAGTTTATTCATTAACTGAATTAGGTGAGACACAT TTTTTAGATTTAATGTTTGATACATCTAGCAAACCAATAAATATTCTTTTAGATTTTAATGCTGTTATAGTAAATTTAAA TAGCCTTACACCAGAAAAACAGAAATTATGTCTCAATAATATTGAAGAGAATGTTCAAGAGTTAAAGAAAACTATTGAGG AAAATATAAGTATAAAGACAGAAGTACCAGAGACAGCAAAAGCAGTGTTGGAGCAACAGTTGGTGCTAGCACAAGCATTG GAAACCTGGATAAATTCTTTAAAAGATAATACGGGGAATTAG
Upstream 100 bases:
>100_bases AAGTCTAAATTATAATACTATAAATTATAGTAAGTATGGAAAATAGTACTATAATTTATAGTATTTGTCAATAGTAAGAA AACTAAAGGAGATGATTTTT
Downstream 100 bases:
>100_bases AATTAGAGAAGCTAACTTAATAATCATTAAACAAAAACCAGCATATTTAATAATGAGATATTAGAAAAAATAAAACAAAT GATATAAACTGAAAAGTATA
Product: hypothetical protein
Products: NA
Alternate protein names: HTH Containing Transcriptional Regulator
Number of amino acids: Translated: 173; Mature: 172
Protein sequence:
>173_residues MATIDLIVLGIVKQQPKSAYDIQKAVEYRNISRWVKISTPSIYKKVIQLEQKGYIESKTVKNGKMPEKAVYSLTELGETH FLDLMFDTSSKPINILLDFNAVIVNLNSLTPEKQKLCLNNIEENVQELKKTIEENISIKTEVPETAKAVLEQQLVLAQAL ETWINSLKDNTGN
Sequences:
>Translated_173_residues MATIDLIVLGIVKQQPKSAYDIQKAVEYRNISRWVKISTPSIYKKVIQLEQKGYIESKTVKNGKMPEKAVYSLTELGETH FLDLMFDTSSKPINILLDFNAVIVNLNSLTPEKQKLCLNNIEENVQELKKTIEENISIKTEVPETAKAVLEQQLVLAQAL ETWINSLKDNTGN >Mature_172_residues ATIDLIVLGIVKQQPKSAYDIQKAVEYRNISRWVKISTPSIYKKVIQLEQKGYIESKTVKNGKMPEKAVYSLTELGETHF LDLMFDTSSKPINILLDFNAVIVNLNSLTPEKQKLCLNNIEENVQELKKTIEENISIKTEVPETAKAVLEQQLVLAQALE TWINSLKDNTGN
Specific function: Unknown
COG id: COG1695
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19592; Mature: 19461
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATIDLIVLGIVKQQPKSAYDIQKAVEYRNISRWVKISTPSIYKKVIQLEQKGYIESKTV CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHCCCCCCCCC KNGKMPEKAVYSLTELGETHFLDLMFDTSSKPINILLDFNAVIVNLNSLTPEKQKLCLNN CCCCCCHHHHHHHHHCCCHHEEEEEECCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHH IEENVQELKKTIEENISIKTEVPETAKAVLEQQLVLAQALETWINSLKDNTGN HHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure ATIDLIVLGIVKQQPKSAYDIQKAVEYRNISRWVKISTPSIYKKVIQLEQKGYIESKTV CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHCCCCCCCCC KNGKMPEKAVYSLTELGETHFLDLMFDTSSKPINILLDFNAVIVNLNSLTPEKQKLCLNN CCCCCCHHHHHHHHHCCCHHEEEEEECCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHH IEENVQELKKTIEENISIKTEVPETAKAVLEQQLVLAQALETWINSLKDNTGN HHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA