| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is blaR1 [H]
Identifier: 126698127
GI number: 126698127
Start: 652525
End: 653907
Strand: Direct
Name: blaR1 [H]
Synonym: CD0548
Alternate gene names: 126698127
Gene position: 652525-653907 (Clockwise)
Preceding gene: 126698126
Following gene: 126698128
Centisome position: 15.21
GC content: 27.11
Gene sequence:
>1383_bases ATGTTCATTAAATTGTTAGAAATGAGTTTTACTTCTGGAGTATTACTTTTAATAGTTATTTTTATAAGAGCATGTTTATT TAAAAAATTACCTAAAAAGGTATTTGTATTATTGTGGTTGATTGTTTTATTTAAACTTCTAATACCAGTAAGTTTAAATT CTGGTTTTAGTATTTATAGTATAATTGAATCGACTTTTGATGTGGAAGTGGGTAATACATCAACAGAAAATTATACTCTT AAGAAAGCTAGTGACTCTACAGGTAAAAACAATTCTGACGAATTTGAAATAATGTCTAATATTGAAAATATTATGATGTT GGAAATGTTGGGCATTTTGTCTTTTATAGTTACTATTATGTTTAGCATACTTTTATGCTTTAGATATTTTAAAATAATTA ATCTTTTTAAAACTTCAATTCATATAAAAAATCATGAGTTCATTAAAAAATGGATGTGTAAGAATAGCCGTTTTAGAAGA TTTATTGTTTGCATATCTGAATTTACTAGGACACCACTTACATCTGGTATTTTAAAACCACGAATTATTTTGCCAAAGCA AATGAATTATGCTAATAATCAAACTTTAGACTTTGTTTTAACTCATGAAATGGTTCATATTAATAGCTTTGATAATCTGT TAAAGTTATTTATGCTTGTAGCTCTTGTTGTCCATTGGTTTAATCCCTTAGTTTGGGTGATGTTTTTTTTACTAAATAAA GACATAGAATTTAGTTGTGATGAAAAGGTTATGAGTATACTTGGTGAAGAATATAGGGCTGATTATGCAACCACACTAAT AAGTCTAGCAGAGGAGAATAATCCATTTTCAATGACAATATGTAGTGGATTTGGAAAGACAAAAATAGAAAAGAGAATAG TTAATATTATGAAATTTAAAAAATCAACTTATGTTACTTTTTTAGTTTCAACTGTATTAGTTTGTGGGACAGGTCTTGTT TTTGCAACAGAAAATAAAGAGATTAATGAGGTTGAATCTTTTGGTTTAACAAAAAATGAACAAAGTGATAAAATTGGATT TTCAATAAGTAGTAAATCAACTGATTTATATTCTCCCAAAGTAGAATCTGATATTCTTGTTAGTAAAGCTAAAAGTGATG GAGAGACTCATTTTAGTACGGCAAAAGTATCTGTAATTGAATTTAGAGAGCATGAAGAATCATCTATGAGCAAAGTAACT AATTCTGAGAATAGTGAAGAAACGTATGTAAATAAATCTAGTAATAGTAAGGATGTACTTTATACTGATTCAGGAGAAGT TTCAATTGAGCAAAGTGGCTATAATGATAATCGCTTTGTCATATCAAGAAAAGGGAATTTGTTAGCAGTTAATAAAGAAC AATATAGAACATGGATAGAGTAA
Upstream 100 bases:
>100_bases GAAAAATTTCTTTCAGCTTTTATTAATAAAGAAAATCTTTCAAGTGATGAGATTACAAAACTTAAACAAATTGTTGAAAA ATTAAAGTGAGGTAAGATTT
Downstream 100 bases:
>100_bases CCATAAATCTTAGTAATATAAAAGATTTAGAATTAAAATACTATCTCAAAATAATTAATTTTGTTTTGAGATAGTATTTT TTATTGAAAAGTTTTTTAAA
Product: penicillin-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 460; Mature: 460
Protein sequence:
>460_residues MFIKLLEMSFTSGVLLLIVIFIRACLFKKLPKKVFVLLWLIVLFKLLIPVSLNSGFSIYSIIESTFDVEVGNTSTENYTL KKASDSTGKNNSDEFEIMSNIENIMMLEMLGILSFIVTIMFSILLCFRYFKIINLFKTSIHIKNHEFIKKWMCKNSRFRR FIVCISEFTRTPLTSGILKPRIILPKQMNYANNQTLDFVLTHEMVHINSFDNLLKLFMLVALVVHWFNPLVWVMFFLLNK DIEFSCDEKVMSILGEEYRADYATTLISLAEENNPFSMTICSGFGKTKIEKRIVNIMKFKKSTYVTFLVSTVLVCGTGLV FATENKEINEVESFGLTKNEQSDKIGFSISSKSTDLYSPKVESDILVSKAKSDGETHFSTAKVSVIEFREHEESSMSKVT NSENSEETYVNKSSNSKDVLYTDSGEVSIEQSGYNDNRFVISRKGNLLAVNKEQYRTWIE
Sequences:
>Translated_460_residues MFIKLLEMSFTSGVLLLIVIFIRACLFKKLPKKVFVLLWLIVLFKLLIPVSLNSGFSIYSIIESTFDVEVGNTSTENYTL KKASDSTGKNNSDEFEIMSNIENIMMLEMLGILSFIVTIMFSILLCFRYFKIINLFKTSIHIKNHEFIKKWMCKNSRFRR FIVCISEFTRTPLTSGILKPRIILPKQMNYANNQTLDFVLTHEMVHINSFDNLLKLFMLVALVVHWFNPLVWVMFFLLNK DIEFSCDEKVMSILGEEYRADYATTLISLAEENNPFSMTICSGFGKTKIEKRIVNIMKFKKSTYVTFLVSTVLVCGTGLV FATENKEINEVESFGLTKNEQSDKIGFSISSKSTDLYSPKVESDILVSKAKSDGETHFSTAKVSVIEFREHEESSMSKVT NSENSEETYVNKSSNSKDVLYTDSGEVSIEQSGYNDNRFVISRKGNLLAVNKEQYRTWIE >Mature_460_residues MFIKLLEMSFTSGVLLLIVIFIRACLFKKLPKKVFVLLWLIVLFKLLIPVSLNSGFSIYSIIESTFDVEVGNTSTENYTL KKASDSTGKNNSDEFEIMSNIENIMMLEMLGILSFIVTIMFSILLCFRYFKIINLFKTSIHIKNHEFIKKWMCKNSRFRR FIVCISEFTRTPLTSGILKPRIILPKQMNYANNQTLDFVLTHEMVHINSFDNLLKLFMLVALVVHWFNPLVWVMFFLLNK DIEFSCDEKVMSILGEEYRADYATTLISLAEENNPFSMTICSGFGKTKIEKRIVNIMKFKKSTYVTFLVSTVLVCGTGLV FATENKEINEVESFGLTKNEQSDKIGFSISSKSTDLYSPKVESDILVSKAKSDGETHFSTAKVSVIEFREHEESSMSKVT NSENSEETYVNKSSNSKDVLYTDSGEVSIEQSGYNDNRFVISRKGNLLAVNKEQYRTWIE
Specific function: BlaR1 is a potential penicillin-binding protein required for induction of beta-lactamase in Bacillus licheniformis [H]
COG id: COG4219
COG function: function code KT; Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M56 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001460 - InterPro: IPR008756 [H]
Pfam domain/function: PF05569 Peptidase_M56; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 52765; Mature: 52765
Theoretical pI: Translated: 7.78; Mature: 7.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFIKLLEMSFTSGVLLLIVIFIRACLFKKLPKKVFVLLWLIVLFKLLIPVSLNSGFSIYS CEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH IIESTFDVEVGNTSTENYTLKKASDSTGKNNSDEFEIMSNIENIMMLEMLGILSFIVTIM HHHHHHEEEECCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH FSILLCFRYFKIINLFKTSIHIKNHEFIKKWMCKNSRFRRFIVCISEFTRTPLTSGILKP HHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHCCCCC RIILPKQMNYANNQTLDFVLTHEMVHINSFDNLLKLFMLVALVVHWFNPLVWVMFFLLNK EEECCCCCCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DIEFSCDEKVMSILGEEYRADYATTLISLAEENNPFSMTICSGFGKTKIEKRIVNIMKFK CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHH KSTYVTFLVSTVLVCGTGLVFATENKEINEVESFGLTKNEQSDKIGFSISSKSTDLYSPK HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCC VESDILVSKAKSDGETHFSTAKVSVIEFREHEESSMSKVTNSENSEETYVNKSSNSKDVL CCCHHHHHCCCCCCCCCHHHHEEEEEEHHHHHHHHHHHHCCCCCCCHHEEECCCCCCEEE YTDSGEVSIEQSGYNDNRFVISRKGNLLAVNKEQYRTWIE EECCCCEEEECCCCCCCEEEEEECCCEEEECHHHHHHCCC >Mature Secondary Structure MFIKLLEMSFTSGVLLLIVIFIRACLFKKLPKKVFVLLWLIVLFKLLIPVSLNSGFSIYS CEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH IIESTFDVEVGNTSTENYTLKKASDSTGKNNSDEFEIMSNIENIMMLEMLGILSFIVTIM HHHHHHEEEECCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH FSILLCFRYFKIINLFKTSIHIKNHEFIKKWMCKNSRFRRFIVCISEFTRTPLTSGILKP HHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHCCCCC RIILPKQMNYANNQTLDFVLTHEMVHINSFDNLLKLFMLVALVVHWFNPLVWVMFFLLNK EEECCCCCCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DIEFSCDEKVMSILGEEYRADYATTLISLAEENNPFSMTICSGFGKTKIEKRIVNIMKFK CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHH KSTYVTFLVSTVLVCGTGLVFATENKEINEVESFGLTKNEQSDKIGFSISSKSTDLYSPK HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCC VESDILVSKAKSDGETHFSTAKVSVIEFREHEESSMSKVTNSENSEETYVNKSSNSKDVL CCCHHHHHCCCCCCCCCHHHHEEEEEEHHHHHHHHHHHHCCCCCCCHHEEECCCCCCEEE YTDSGEVSIEQSGYNDNRFVISRKGNLLAVNKEQYRTWIE EECCCCEEEECCCCCCCEEEEEECCCEEEECHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3040663; 3260234; 2404938 [H]