Click here to switch to the map view.

The map label for this gene is tndX [H]

Identifier: 126698093

GI number: 126698093

Start: 604427

End: 606028

Strand: Direct

Name: tndX [H]

Synonym: CD0511

Alternate gene names: 126698093

Gene position: 604427-606028 (Clockwise)

Preceding gene: 126698091

Following gene: 126698094

Centisome position: 14.09

GC content: 35.02

Gene sequence:

>1602_bases
TTGTTAAAACAGCAAGCAAATAATAAAGAAAAAGTTGCATTATACTCTCGCCTTTCACGAGATGATGGGTTGGACAAAGA
AAGTAATAGCATTGCTAATCAAAGAGAAATGTTGAAGCGATATGCGAAAGAAAACAAGTTTTATGTATATGATGAGTACA
TTGATGATGGATTCAGCGGAACAACTTTTAACAGACCTGCATTGAATCGAATGTTTGAAGATATTGAAGCAGGAAAAGTT
AATGTAGTTCTGGTCAAGGATATGTCACGTCTAGGACGGAACAATGCACTATTCATGTACTATGTGGAAGAAGTTTTTCC
AGATTTAGATGTTCGCTTTATCGCTATCAATGATATGGTTGATACTGCACAAGATGATAACGAAATTATGCCCTTCAAAT
CTGTCTTGAACGAATATTATGCTCGTGATATATCAAAGAAAATCCGTAGTTCAATACGAACAACAGCTTTGACTGGCGGT
TTTACAGGTGCATTTGCTCCTTATGGTTATTTAGTTGACCCAGAGAACAAAAAGAAATTGATTGTTGACCCTGAAACAGC
GCCGATTGTGAAGCGGATTTTTGAATTATCACAACAAGGTACAAGTACACATCAAATCGCAAGGATACTTTGTAAAGATG
GAATTTTAGTTCCTAGAGCCTATCGAGCAAAGAAAAAAGGGATTTTGGAGCAAAGCAAAGGATTTACGTTTCCTACTGAT
TGGGTTGGAAAGAATGTTAAGATGATTTTGGAAAATCAAGTTTATCTAGGACACATGGTATCTCATAAATCACAAACCAA
ATCATTCAAGAACAAGAAAATCGTTCCTGTGCCAAAAGAAGATTGGATAGTGGTTGAGAATACTCATGAAGCTATTATCG
ATAAGGAAACTTTTGAGATAGTACAAAAATTTATTAGTGTAAAGAAACAGCCTAACAAAACAGGGAAACCCAATATCTTT
GTGGGATTGGTTAAGTGTCCAGATTGTGGAAGAAATTTAGCGTATTCCAATCCAAACGGAAATGAACCAAGATTCCGTTG
CAGAACATACGCAAGAAATACCGAACTTTGCACTACTCACGCAATTTCATACAAAGCTTTATATGAAATTGTTCAAAATG
ATATTAAAAATCATGTAAATAGTATGGAAGAACTAGGAGACCATTTTATCAAAGAAATGCGAGAGCTAAGTGAAACGAGC
GGAAGTCAGAAGATTCATCAATTCAACCAAGAATTAGTTTCCTTAGAGAAACGGATTGATGAAATAGACAGTATTTTTAC
CAAACTTATAGAGCAAAATGCTTTAGGGAAAATAACTGATGAAAGATTCTCTAAAATGTCTATGAACTATGAAACTGAAC
AAGCAGAGGTAGTGCAAAGCTATAGAGAATTAAAGTCAAAAATAAAATCCGAAGAGGAGAAAGTACAGGGTACGGATAGA
TTCCTTGAAACTATTAGTAAATACAAAGATGTTACAGAGTTAAACCGTTCTATGCTGTGTGAGCTGATTGATTCAATTTA
CGTGTATCAAGCAGAGGGAATCGGTAAAGAACGTACTCAAAAAGTAGAAATCAATTATAGGTTTCTAGCAGTGTCTCATT
GA

Upstream 100 bases:

>100_bases
ATGACACTAAAACAGTCAAATAAATAGCTGAAACCCCTATGAGGGCGTGGTATAATGGAATGGATATGAGTTGTTTGTTT
GCTGTGGAAAGGAGCTTACA

Downstream 100 bases:

>100_bases
TACATTCTCTGATGGTAATGGAAGAACATCAAGAGCCTTATCATATCTATATTTGATTGATAAAGGATATGATACTTTCA
AGGAGTTTTCAATATCATAT

Product: conjugative transposon site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MLKQQANNKEKVALYSRLSRDDGLDKESNSIANQREMLKRYAKENKFYVYDEYIDDGFSGTTFNRPALNRMFEDIEAGKV
NVVLVKDMSRLGRNNALFMYYVEEVFPDLDVRFIAINDMVDTAQDDNEIMPFKSVLNEYYARDISKKIRSSIRTTALTGG
FTGAFAPYGYLVDPENKKKLIVDPETAPIVKRIFELSQQGTSTHQIARILCKDGILVPRAYRAKKKGILEQSKGFTFPTD
WVGKNVKMILENQVYLGHMVSHKSQTKSFKNKKIVPVPKEDWIVVENTHEAIIDKETFEIVQKFISVKKQPNKTGKPNIF
VGLVKCPDCGRNLAYSNPNGNEPRFRCRTYARNTELCTTHAISYKALYEIVQNDIKNHVNSMEELGDHFIKEMRELSETS
GSQKIHQFNQELVSLEKRIDEIDSIFTKLIEQNALGKITDERFSKMSMNYETEQAEVVQSYRELKSKIKSEEEKVQGTDR
FLETISKYKDVTELNRSMLCELIDSIYVYQAEGIGKERTQKVEINYRFLAVSH

Sequences:

>Translated_533_residues
MLKQQANNKEKVALYSRLSRDDGLDKESNSIANQREMLKRYAKENKFYVYDEYIDDGFSGTTFNRPALNRMFEDIEAGKV
NVVLVKDMSRLGRNNALFMYYVEEVFPDLDVRFIAINDMVDTAQDDNEIMPFKSVLNEYYARDISKKIRSSIRTTALTGG
FTGAFAPYGYLVDPENKKKLIVDPETAPIVKRIFELSQQGTSTHQIARILCKDGILVPRAYRAKKKGILEQSKGFTFPTD
WVGKNVKMILENQVYLGHMVSHKSQTKSFKNKKIVPVPKEDWIVVENTHEAIIDKETFEIVQKFISVKKQPNKTGKPNIF
VGLVKCPDCGRNLAYSNPNGNEPRFRCRTYARNTELCTTHAISYKALYEIVQNDIKNHVNSMEELGDHFIKEMRELSETS
GSQKIHQFNQELVSLEKRIDEIDSIFTKLIEQNALGKITDERFSKMSMNYETEQAEVVQSYRELKSKIKSEEEKVQGTDR
FLETISKYKDVTELNRSMLCELIDSIYVYQAEGIGKERTQKVEINYRFLAVSH
>Mature_533_residues
MLKQQANNKEKVALYSRLSRDDGLDKESNSIANQREMLKRYAKENKFYVYDEYIDDGFSGTTFNRPALNRMFEDIEAGKV
NVVLVKDMSRLGRNNALFMYYVEEVFPDLDVRFIAINDMVDTAQDDNEIMPFKSVLNEYYARDISKKIRSSIRTTALTGG
FTGAFAPYGYLVDPENKKKLIVDPETAPIVKRIFELSQQGTSTHQIARILCKDGILVPRAYRAKKKGILEQSKGFTFPTD
WVGKNVKMILENQVYLGHMVSHKSQTKSFKNKKIVPVPKEDWIVVENTHEAIIDKETFEIVQKFISVKKQPNKTGKPNIF
VGLVKCPDCGRNLAYSNPNGNEPRFRCRTYARNTELCTTHAISYKALYEIVQNDIKNHVNSMEELGDHFIKEMRELSETS
GSQKIHQFNQELVSLEKRIDEIDSIFTKLIEQNALGKITDERFSKMSMNYETEQAEVVQSYRELKSKIKSEEEKVQGTDR
FLETISKYKDVTELNRSMLCELIDSIYVYQAEGIGKERTQKVEINYRFLAVSH

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 61554; Mature: 61554

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQQANNKEKVALYSRLSRDDGLDKESNSIANQREMLKRYAKENKFYVYDEYIDDGFSG
CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHCCCCCC
TTFNRPALNRMFEDIEAGKVNVVLVKDMSRLGRNNALFMYYVEEVFPDLDVRFIAINDMV
CCCCCHHHHHHHHHHCCCCEEEEEEECHHHCCCCCCEEEEEHHHHCCCCCEEEEEEECHH
DTAQDDNEIMPFKSVLNEYYARDISKKIRSSIRTTALTGGFTGAFAPYGYLVDPENKKKL
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEE
IVDPETAPIVKRIFELSQQGTSTHQIARILCKDGILVPRAYRAKKKGILEQSKGFTFPTD
EECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHCCCCCCCHH
WVGKNVKMILENQVYLGHMVSHKSQTKSFKNKKIVPVPKEDWIVVENTHEAIIDKETFEI
HHCCCCEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
VQKFISVKKQPNKTGKPNIFVGLVKCPDCGRNLAYSNPNGNEPRFRCRTYARNTELCTTH
HHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHH
AISYKALYEIVQNDIKNHVNSMEELGDHFIKEMRELSETSGSQKIHQFNQELVSLEKRID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
EIDSIFTKLIEQNALGKITDERFSKMSMNYETEQAEVVQSYRELKSKIKSEEEKVQGTDR
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLETISKYKDVTELNRSMLCELIDSIYVYQAEGIGKERTQKVEINYRFLAVSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEEEEEEEECC
>Mature Secondary Structure
MLKQQANNKEKVALYSRLSRDDGLDKESNSIANQREMLKRYAKENKFYVYDEYIDDGFSG
CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHCCCCCC
TTFNRPALNRMFEDIEAGKVNVVLVKDMSRLGRNNALFMYYVEEVFPDLDVRFIAINDMV
CCCCCHHHHHHHHHHCCCCEEEEEEECHHHCCCCCCEEEEEHHHHCCCCCEEEEEEECHH
DTAQDDNEIMPFKSVLNEYYARDISKKIRSSIRTTALTGGFTGAFAPYGYLVDPENKKKL
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEE
IVDPETAPIVKRIFELSQQGTSTHQIARILCKDGILVPRAYRAKKKGILEQSKGFTFPTD
EECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHCCCCCCCHH
WVGKNVKMILENQVYLGHMVSHKSQTKSFKNKKIVPVPKEDWIVVENTHEAIIDKETFEI
HHCCCCEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
VQKFISVKKQPNKTGKPNIFVGLVKCPDCGRNLAYSNPNGNEPRFRCRTYARNTELCTTH
HHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHH
AISYKALYEIVQNDIKNHVNSMEELGDHFIKEMRELSETSGSQKIHQFNQELVSLEKRID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
EIDSIFTKLIEQNALGKITDERFSKMSMNYETEQAEVVQSYRELKSKIKSEEEKVQGTDR
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLETISKYKDVTELNRSMLCELIDSIYVYQAEGIGKERTQKVEINYRFLAVSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]