| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698001
Identifier: 126698001
GI number: 126698001
Start: 509624
End: 510316
Strand: Direct
Name: 126698001
Synonym: CD0430
Alternate gene names: NA
Gene position: 509624-510316 (Clockwise)
Preceding gene: 126698000
Following gene: 126698002
Centisome position: 11.88
GC content: 32.32
Gene sequence:
>693_bases ATGGAACAGAAAATGAGAAAAATAGACAGTCTTGGTGGATTGGCTTGCTTACTCTTAACTCTGATTTCCTGTACAGTATC TATTTTTACAAAAGATTACTATATGCATGCTCTGTTTGTAGGATGGCTTTGTATCATTTTGATATACTTCGGCTTTTACA AGCAGAGCTTGTTTTATGTTGTGATATATACTTTTACAGCATTTTGGCTTTTAGAAATGATTCCTAAAGGGATAGTTTTT ATTTCGCCAATGCTATTAGGTATGGTGTACAAATTCATTGTTCCTATTATGGCTGCATATTTAACTTTTAAGATACCGTC AGGGAAACTAATTGCAGTTTTTCAAAAGTGTGCTTTACCTCAGAATATCATCTTGATTTTGCTTGTAATCATTAGATTTA TTCCAACAATATCAGGAGAATTTAAAACCATTAGAGAAGCAATGCGAGTTAGAGGTTTTACGGGAAGTGTAAAAAGAGTT TTGTTCCACCCTTTACAAACAATGGAATATGCAGTCGTTCCTTTAATCTTTCGGTCAATAAAGGTTGGAGATGAATTGGC GGCTGCATCTATTGTAAGAGGAATTGAAAATCCGGCTAAGAAATATAGTTATTATGAAACAAAATTTACAAAAGTAGATG TCATTATTTTATTTATTAGTATTTGCTTAATGATAGCCTGCATTTTTAGATAG
Upstream 100 bases:
>100_bases GGAGTAGCTGTAACAGTTATTTTATCTGCATTAGGAATTTTATTTGCACAAAAAATATTGAAAAAACATTTTAAGAAGGC GGGTATATTAGATTAATGCT
Downstream 100 bases:
>100_bases GAGGGAAGGTTATGGAAAATAAGATAAAAATTAATAACATAAACTTCTCCTATCGAGGAAATGACAAGCAATTAACCGAT ATTAATTTAACTATTTTAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 230; Mature: 230
Protein sequence:
>230_residues MEQKMRKIDSLGGLACLLLTLISCTVSIFTKDYYMHALFVGWLCIILIYFGFYKQSLFYVVIYTFTAFWLLEMIPKGIVF ISPMLLGMVYKFIVPIMAAYLTFKIPSGKLIAVFQKCALPQNIILILLVIIRFIPTISGEFKTIREAMRVRGFTGSVKRV LFHPLQTMEYAVVPLIFRSIKVGDELAAASIVRGIENPAKKYSYYETKFTKVDVIILFISICLMIACIFR
Sequences:
>Translated_230_residues MEQKMRKIDSLGGLACLLLTLISCTVSIFTKDYYMHALFVGWLCIILIYFGFYKQSLFYVVIYTFTAFWLLEMIPKGIVF ISPMLLGMVYKFIVPIMAAYLTFKIPSGKLIAVFQKCALPQNIILILLVIIRFIPTISGEFKTIREAMRVRGFTGSVKRV LFHPLQTMEYAVVPLIFRSIKVGDELAAASIVRGIENPAKKYSYYETKFTKVDVIILFISICLMIACIFR >Mature_230_residues MEQKMRKIDSLGGLACLLLTLISCTVSIFTKDYYMHALFVGWLCIILIYFGFYKQSLFYVVIYTFTAFWLLEMIPKGIVF ISPMLLGMVYKFIVPIMAAYLTFKIPSGKLIAVFQKCALPQNIILILLVIIRFIPTISGEFKTIREAMRVRGFTGSVKRV LFHPLQTMEYAVVPLIFRSIKVGDELAAASIVRGIENPAKKYSYYETKFTKVDVIILFISICLMIACIFR
Specific function: Unknown
COG id: COG0619
COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26329; Mature: 26329
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 7.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQKMRKIDSLGGLACLLLTLISCTVSIFTKDYYMHALFVGWLCIILIYFGFYKQSLFYV CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIYTFTAFWLLEMIPKGIVFISPMLLGMVYKFIVPIMAAYLTFKIPSGKLIAVFQKCALP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC QNIILILLVIIRFIPTISGEFKTIREAMRVRGFTGSVKRVLFHPLQTMEYAVVPLIFRSI HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KVGDELAAASIVRGIENPAKKYSYYETKFTKVDVIILFISICLMIACIFR HCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEQKMRKIDSLGGLACLLLTLISCTVSIFTKDYYMHALFVGWLCIILIYFGFYKQSLFYV CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIYTFTAFWLLEMIPKGIVFISPMLLGMVYKFIVPIMAAYLTFKIPSGKLIAVFQKCALP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC QNIILILLVIIRFIPTISGEFKTIREAMRVRGFTGSVKRVLFHPLQTMEYAVVPLIFRSI HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KVGDELAAASIVRGIENPAKKYSYYETKFTKVDVIILFISICLMIACIFR HCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA