| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698000
Identifier: 126698000
GI number: 126698000
Start: 509017
End: 509619
Strand: Direct
Name: 126698000
Synonym: CD0429
Alternate gene names: NA
Gene position: 509017-509619 (Clockwise)
Preceding gene: 126697999
Following gene: 126698001
Centisome position: 11.86
GC content: 31.84
Gene sequence:
>603_bases ATGTCAGAAAAAAAATTAACAGTAAGAGATATTGTAACAGTTGCAATTATGATAGCATTATTTTTTGCTATTTCGATTGT TATTGGTATGGGGACAGTTACTATGCCGATTTTATATTTGTATGGTACGGCAGGAATTGAAATGTTTATAGGAGCAATAT TTTATCTTGTTGCAGCAAATAGAGTCAATAAGCATGGACTACTATTTATTTGGATTTTAATTTATGGTTTGATAACAGCA GCGATGGGATATGTGTTTATGCTTCCATATTTTATCGGATTAGCAATTATATGTGAACTTACAATGATTGGAAAGAATAC TTATAGAAATCCAATTAGAAACATGATTGGCTGGTGTACCTATGCAATAGGAATGTTTCTTGGTATAGGGGTACCTTGTT GGATTGCATGGGAAAGCTATCAAAAACAAGCACTTGCAGGTGGATTTGCGGATACTACATTAAAGCTTCAGTATGAAATG GTATCTTCACCATCATTGATATTAGTAGGAGTAGCTGTAACAGTTATTTTATCTGCATTAGGAATTTTATTTGCACAAAA AATATTGAAAAAACATTTTAAGAAGGCGGGTATATTAGATTAA
Upstream 100 bases:
>100_bases ATACCTGTTCTTTGATAAAATATTTATCAAGGACAGGTATTTTTTGCTGGATTAATGCCAATAAGTTAGCCATGTCTAAT ATTTTAAAAAGGAGAAGAAG
Downstream 100 bases:
>100_bases TGCTATGGAACAGAAAATGAGAAAAATAGACAGTCTTGGTGGATTGGCTTGCTTACTCTTAACTCTGATTTCCTGTACAG TATCTATTTTTACAAAAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MSEKKLTVRDIVTVAIMIALFFAISIVIGMGTVTMPILYLYGTAGIEMFIGAIFYLVAANRVNKHGLLFIWILIYGLITA AMGYVFMLPYFIGLAIICELTMIGKNTYRNPIRNMIGWCTYAIGMFLGIGVPCWIAWESYQKQALAGGFADTTLKLQYEM VSSPSLILVGVAVTVILSALGILFAQKILKKHFKKAGILD
Sequences:
>Translated_200_residues MSEKKLTVRDIVTVAIMIALFFAISIVIGMGTVTMPILYLYGTAGIEMFIGAIFYLVAANRVNKHGLLFIWILIYGLITA AMGYVFMLPYFIGLAIICELTMIGKNTYRNPIRNMIGWCTYAIGMFLGIGVPCWIAWESYQKQALAGGFADTTLKLQYEM VSSPSLILVGVAVTVILSALGILFAQKILKKHFKKAGILD >Mature_199_residues SEKKLTVRDIVTVAIMIALFFAISIVIGMGTVTMPILYLYGTAGIEMFIGAIFYLVAANRVNKHGLLFIWILIYGLITAA MGYVFMLPYFIGLAIICELTMIGKNTYRNPIRNMIGWCTYAIGMFLGIGVPCWIAWESYQKQALAGGFADTTLKLQYEMV SSPSLILVGVAVTVILSALGILFAQKILKKHFKKAGILD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22051; Mature: 21920
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 5.5 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKKLTVRDIVTVAIMIALFFAISIVIGMGTVTMPILYLYGTAGIEMFIGAIFYLVAAN CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVNKHGLLFIWILIYGLITAAMGYVFMLPYFIGLAIICELTMIGKNTYRNPIRNMIGWCT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH YAIGMFLGIGVPCWIAWESYQKQALAGGFADTTLKLQYEMVSSPSLILVGVAVTVILSAL HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHEEEEHHHHCCCCHHHHHHHHHHHHHHH GILFAQKILKKHFKKAGILD HHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SEKKLTVRDIVTVAIMIALFFAISIVIGMGTVTMPILYLYGTAGIEMFIGAIFYLVAAN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVNKHGLLFIWILIYGLITAAMGYVFMLPYFIGLAIICELTMIGKNTYRNPIRNMIGWCT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH YAIGMFLGIGVPCWIAWESYQKQALAGGFADTTLKLQYEMVSSPSLILVGVAVTVILSAL HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHEEEEHHHHCCCCHHHHHHHHHHHHHHH GILFAQKILKKHFKKAGILD HHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA