| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126697876
Identifier: 126697876
GI number: 126697876
Start: 366059
End: 366802
Strand: Direct
Name: 126697876
Synonym: CD0304
Alternate gene names: NA
Gene position: 366059-366802 (Clockwise)
Preceding gene: 126697875
Following gene: 126697877
Centisome position: 8.53
GC content: 32.93
Gene sequence:
>744_bases ATGAAAAAAGTATTAATAGTAGGGGAATCTTGGGTAAAAAATATAACTCATATAAAAGGATTTGATACGTTTGTTACAAC TCATTATGAAGAAGCTGTAAAGTGGTTGAAAGAAGCAATAGAATCTGGAGGATATGAGACAGTTCATATGCCTGCACATG TAGCAGCAGATAGTTTTCCGTATAAATTAGAAGAGTTAAATGAGTATGACTGTATAATATTATCTGATATAGGTTCTAAT ACGTTCTTATTATCTAATAGTACTTTTATAGATTGCAATAGTAATCCAGATAGACTTGAACTAATCAAAGAGTATGTAAA TAATGGTGGGGCGTTAATCATGGTAGGTGGATATATGTCATTTACAGGAATAGATGCAAAAGCTAGATTCGGAGAAACTG CTATCAAAGATGTATTACCAATAACAATGATAGATAAAGATGATAGAGTTGAAAAACCAGCAGGAATAATTCCAGAAGTT ATTGACTCTGAACATCCAGTATTAAAAGGTATACCAACAGAATGGCCAAAGTTTTTAGGATATAACAAAACAGTAGCTAG AGATAATTGTCCTGTTTTAGCAACTATTGGAGGAGACCCATTTGTAGCTGTTGGCGAGTTTGGAAAAGGAAAATCTGCTA TCTTTAGTTCTGACTGTGCACCTCACTGGGGTCCAATAGAATTTACTGATTGGAAATACTATAATAAATTATGGGTTAAT ATGCTTGATTGGTTAACATGCTAA
Upstream 100 bases:
>100_bases CATTCAATTGATGAATATGTTGAAATTAAGGAGTATTTAGATAGTATACTTATGTATGCAAGTCTAATATTAAACTTATA AAAGTAGGAGGAATATATAA
Downstream 100 bases:
>100_bases AAATTTTATAAAACTTGAAAACCTCTTACTTGATAAAATGAAACTTACAAGTCAAGAGGTTTTATTGTATAAAATGGTTG TATGGTAGAAAATATTTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 247; Mature: 247
Protein sequence:
>247_residues MKKVLIVGESWVKNITHIKGFDTFVTTHYEEAVKWLKEAIESGGYETVHMPAHVAADSFPYKLEELNEYDCIILSDIGSN TFLLSNSTFIDCNSNPDRLELIKEYVNNGGALIMVGGYMSFTGIDAKARFGETAIKDVLPITMIDKDDRVEKPAGIIPEV IDSEHPVLKGIPTEWPKFLGYNKTVARDNCPVLATIGGDPFVAVGEFGKGKSAIFSSDCAPHWGPIEFTDWKYYNKLWVN MLDWLTC
Sequences:
>Translated_247_residues MKKVLIVGESWVKNITHIKGFDTFVTTHYEEAVKWLKEAIESGGYETVHMPAHVAADSFPYKLEELNEYDCIILSDIGSN TFLLSNSTFIDCNSNPDRLELIKEYVNNGGALIMVGGYMSFTGIDAKARFGETAIKDVLPITMIDKDDRVEKPAGIIPEV IDSEHPVLKGIPTEWPKFLGYNKTVARDNCPVLATIGGDPFVAVGEFGKGKSAIFSSDCAPHWGPIEFTDWKYYNKLWVN MLDWLTC >Mature_247_residues MKKVLIVGESWVKNITHIKGFDTFVTTHYEEAVKWLKEAIESGGYETVHMPAHVAADSFPYKLEELNEYDCIILSDIGSN TFLLSNSTFIDCNSNPDRLELIKEYVNNGGALIMVGGYMSFTGIDAKARFGETAIKDVLPITMIDKDDRVEKPAGIIPEV IDSEHPVLKGIPTEWPKFLGYNKTVARDNCPVLATIGGDPFVAVGEFGKGKSAIFSSDCAPHWGPIEFTDWKYYNKLWVN MLDWLTC
Specific function: Unknown
COG id: COG5426
COG function: function code S; Uncharacterized membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27595; Mature: 27595
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVLIVGESWVKNITHIKGFDTFVTTHYEEAVKWLKEAIESGGYETVHMPAHVAADSFP CCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCC YKLEELNEYDCIILSDIGSNTFLLSNSTFIDCNSNPDRLELIKEYVNNGGALIMVGGYMS CHHHHCCCCCEEEEEECCCCEEEEECCEEEECCCCCHHHHHHHHHHCCCCEEEEECCEEE FTGIDAKARFGETAIKDVLPITMIDKDDRVEKPAGIIPEVIDSEHPVLKGIPTEWPKFLG EECCCCHHHCCHHHHHHCCCEEEECCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHCC YNKTVARDNCPVLATIGGDPFVAVGEFGKGKSAIFSSDCAPHWGPIEFTDWKYYNKLWVN CCCCCCCCCCCEEEEECCCCEEEECCCCCCCCEEEECCCCCCCCCCEECCHHHHHHHHHH MLDWLTC HHHHHCC >Mature Secondary Structure MKKVLIVGESWVKNITHIKGFDTFVTTHYEEAVKWLKEAIESGGYETVHMPAHVAADSFP CCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCC YKLEELNEYDCIILSDIGSNTFLLSNSTFIDCNSNPDRLELIKEYVNNGGALIMVGGYMS CHHHHCCCCCEEEEEECCCCEEEEECCEEEECCCCCHHHHHHHHHHCCCCEEEEECCEEE FTGIDAKARFGETAIKDVLPITMIDKDDRVEKPAGIIPEVIDSEHPVLKGIPTEWPKFLG EECCCCHHHCCHHHHHHCCCEEEECCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHCC YNKTVARDNCPVLATIGGDPFVAVGEFGKGKSAIFSSDCAPHWGPIEFTDWKYYNKLWVN CCCCCCCCCCCEEEEECCCCEEEECCCCCCCCEEEECCCCCCCCCCEECCHHHHHHHHHH MLDWLTC HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA