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The map label for this gene is rbsC [H]

Identifier: 126697874

GI number: 126697874

Start: 363595

End: 364593

Strand: Direct

Name: rbsC [H]

Synonym: CD0302

Alternate gene names: 126697874

Gene position: 363595-364593 (Clockwise)

Preceding gene: 126697873

Following gene: 126697875

Centisome position: 8.47

GC content: 32.53

Gene sequence:

>999_bases
ATGAGTTCAATAACTAAGCATAAAGAAGAAAAATCTTCTCCATTATTGACAAAATTAACAAGTGTATTTAGAGACCAAGG
GAGTGCAGCTGTAGGACTTGTAATAATTTTTATAATAATGAGTGTAGCTTCATCTAACTTTTTAACTTTAGATAATTTAA
TTAATGTTGGAAGACAAATATCAATAAATGCAATACTTGCAGTAGGTATGACATTTGTAATAATTACAGGAGGAATAGAT
TTAAGTGTAGGAGCAGTAATTGCTTTAGTAGGTACATTTTGGGCTACAACAGTAGTGAATTATAATGCACCTATATGGGT
AGGTATGATACTTGCATTAACAATAGGGACAATATTAGGAGTCATAAAAGGTGCAATTATTTCAACACAAAAACTACCTC
CATTCATTGTAACTTTAGCCATGTTAACGATAATAAGTGGGGCAAGCTTTGTATTTACAGGAGGAAGACCTATATCAGTA
AATACAGATGCATTTAAGATGCTCGGTAGAGGATATATTGGACCAATACCAATACCAGTTATAATTATGATTATAGTTGT
AATAGCAGGACATTTTCTATTAAAAAGAACTAATTTTGGACGTCCTGTACATGCAGTAGGTGGAAATGAAGAGGCCGCTA
GATTATGTGGAGTAAAAGTAAATAAAGTTATAGTAAAAGTATACGCACTAGCTGGACTACTAACAGCATTAGCTGGGATA
ATACTATCATCACGTTTGGCATCAGGTTCACCAACTGTTGGAGATGGAGCAGAATTGGATGCTATAGCAGCCGTTGTGCT
TGGTGGCACTAATATGATGGGTGGTTCTGGTTCTATAGTAGGTACATGTATAGGTGTCGGAATAATAGGAATATTAGGAA
ATGGATTAAACTTATTAAGTGTATCTTCATATAATCAAATGATTATAAAAGGTTTGGTAATGTTATTTGCTATATGGATA
AATAATATAAAATTAAAAAAATCAGCTAAATCTAAATAG

Upstream 100 bases:

>100_bases
AGAATAATGGTTATGAGAGAAGGTCATATAAGTGGATTTTTAGAAGGTGAAGAAATGGTTGAAAATAATGTATTAAAATT
GGCTTTCGGAGGTAAAATTA

Downstream 100 bases:

>100_bases
TAATTAAATTTTAGCTTATAAACTATAAAAATTATTAAGTTTTTGTATATATTTTTATACTTTAATTTGCATACATCTTT
ATACATTGAATGGGAATATG

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSSITKHKEEKSSPLLTKLTSVFRDQGSAAVGLVIIFIIMSVASSNFLTLDNLINVGRQISINAILAVGMTFVIITGGID
LSVGAVIALVGTFWATTVVNYNAPIWVGMILALTIGTILGVIKGAIISTQKLPPFIVTLAMLTIISGASFVFTGGRPISV
NTDAFKMLGRGYIGPIPIPVIIMIIVVIAGHFLLKRTNFGRPVHAVGGNEEAARLCGVKVNKVIVKVYALAGLLTALAGI
ILSSRLASGSPTVGDGAELDAIAAVVLGGTNMMGGSGSIVGTCIGVGIIGILGNGLNLLSVSSYNQMIIKGLVMLFAIWI
NNIKLKKSAKSK

Sequences:

>Translated_332_residues
MSSITKHKEEKSSPLLTKLTSVFRDQGSAAVGLVIIFIIMSVASSNFLTLDNLINVGRQISINAILAVGMTFVIITGGID
LSVGAVIALVGTFWATTVVNYNAPIWVGMILALTIGTILGVIKGAIISTQKLPPFIVTLAMLTIISGASFVFTGGRPISV
NTDAFKMLGRGYIGPIPIPVIIMIIVVIAGHFLLKRTNFGRPVHAVGGNEEAARLCGVKVNKVIVKVYALAGLLTALAGI
ILSSRLASGSPTVGDGAELDAIAAVVLGGTNMMGGSGSIVGTCIGVGIIGILGNGLNLLSVSSYNQMIIKGLVMLFAIWI
NNIKLKKSAKSK
>Mature_331_residues
SSITKHKEEKSSPLLTKLTSVFRDQGSAAVGLVIIFIIMSVASSNFLTLDNLINVGRQISINAILAVGMTFVIITGGIDL
SVGAVIALVGTFWATTVVNYNAPIWVGMILALTIGTILGVIKGAIISTQKLPPFIVTLAMLTIISGASFVFTGGRPISVN
TDAFKMLGRGYIGPIPIPVIIMIIVVIAGHFLLKRTNFGRPVHAVGGNEEAARLCGVKVNKVIVKVYALAGLLTALAGII
LSSRLASGSPTVGDGAELDAIAAVVLGGTNMMGGSGSIVGTCIGVGIIGILGNGLNLLSVSSYNQMIIKGLVMLFAIWIN
NIKLKKSAKSK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=46.4516129032258, Blast_Score=242, Evalue=3e-65,
Organism=Escherichia coli, GI1788896, Length=333, Percent_Identity=34.2342342342342, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI145693152, Length=302, Percent_Identity=36.4238410596026, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1790524, Length=324, Percent_Identity=32.7160493827161, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI87082395, Length=241, Percent_Identity=39.0041493775934, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789992, Length=139, Percent_Identity=47.4820143884892, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1788471, Length=334, Percent_Identity=32.6347305389222, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI145693214, Length=237, Percent_Identity=37.1308016877637, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787794, Length=280, Percent_Identity=30, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1787793, Length=273, Percent_Identity=30.7692307692308, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34398; Mature: 34267

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSITKHKEEKSSPLLTKLTSVFRDQGSAAVGLVIIFIIMSVASSNFLTLDNLINVGRQI
CCCCHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCE
SINAILAVGMTFVIITGGIDLSVGAVIALVGTFWATTVVNYNAPIWVGMILALTIGTILG
EHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VIKGAIISTQKLPPFIVTLAMLTIISGASFVFTGGRPISVNTDAFKMLGRGYIGPIPIPV
HHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCEEEEECHHHHHHHCCCCCCCCCHHH
IIMIIVVIAGHFLLKRTNFGRPVHAVGGNEEAARLCGVKVNKVIVKVYALAGLLTALAGI
HHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ILSSRLASGSPTVGDGAELDAIAAVVLGGTNMMGGSGSIVGTCIGVGIIGILGNGLNLLS
HHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
VSSYNQMIIKGLVMLFAIWINNIKLKKSAKSK
ECHHHHHHHHHHHHHHHHHHCCEEECCCCCCC
>Mature Secondary Structure 
SSITKHKEEKSSPLLTKLTSVFRDQGSAAVGLVIIFIIMSVASSNFLTLDNLINVGRQI
CCCHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCE
SINAILAVGMTFVIITGGIDLSVGAVIALVGTFWATTVVNYNAPIWVGMILALTIGTILG
EHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VIKGAIISTQKLPPFIVTLAMLTIISGASFVFTGGRPISVNTDAFKMLGRGYIGPIPIPV
HHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCEEEEECHHHHHHHCCCCCCCCCHHH
IIMIIVVIAGHFLLKRTNFGRPVHAVGGNEEAARLCGVKVNKVIVKVYALAGLLTALAGI
HHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ILSSRLASGSPTVGDGAELDAIAAVVLGGTNMMGGSGSIVGTCIGVGIIGILGNGLNLLS
HHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
VSSYNQMIIKGLVMLFAIWINNIKLKKSAKSK
ECHHHHHHHHHHHHHHHHHHCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]