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The map label for this gene is fliA [H]

Identifier: 126697838

GI number: 126697838

Start: 327681

End: 328382

Strand: Direct

Name: fliA [H]

Synonym: CD0266

Alternate gene names: 126697838

Gene position: 327681-328382 (Clockwise)

Preceding gene: 126697837

Following gene: 126697839

Centisome position: 7.64

GC content: 26.35

Gene sequence:

>702_bases
ATGAATAGAGAAGAATTAATAAAAGAGAATATGCCTCTTGTAAAGAGTATAGCAAGAAAATTTTTTATACCAGGGAAAGG
TTTTGAATATCAAGACTTAGTAAATAGTGGAGTCATTGGATTGATTGATGCAATAAATAAATTTGATGCTGAAAAAGGGG
CAAAGTTTTCTAGTTACTCTTATATAAAAATAAAATCTGCTATATTAGATGAAATTAGAAATCAAAGTCCAATTTCTAAA
CATAATCTAACTAAAGTAAATAAGTATAATAGAGTGGTAGAAAAGTTGCAATCTAAATTATTAAGAGAGCCAACTTCATA
TGAAATTGCAAAAGAATTAAAGGTTTCAGAAAAAGAACTTCATGATATCGAAAGTAATATAGATATGTTAAATATTGTAT
CATTAAACTATGTAATCTTTGAAGATACAAATGAAACTGTACAAGATGTAATAAGTGATAGAGAAGAGGAAGCTCCAGAA
AATATAATAGAAGAAGAAGAAAAGTTAGAGATTCTATCCAAAGCAATTAGTAATTTAAATGAAAGAGAAAAATTAATACT
TTCACTGTACTATTATGAAGATTTAAATCTAAAGGAGATAGGAAAAGTGCTAGGTGTTTCAGAATCAAGAGTTTCACAAC
TCCACAGAAAATCAATAAGAAACTTAAGAAACAAGATAAAAGAACTTAAATATTCTATATAG

Upstream 100 bases:

>100_bases
GCAAAGAGAATGGTAAGTCAGTCAAGAGAAGATATTGTTGATAATAAAAGTTTTCTAAGAAAGATGTTTAGTATATTTAA
AAGCTAAGGAGGCGTAGTTA

Downstream 100 bases:

>100_bases
ATGGTGATTGATAAGATGATACAAATTATATTAATAGTAGTGTCTATTTTAATAATAGTAACTATAGTTATAAATTTACA
TAAGGAATCAAAAAATAAAG

Product: RNA polymerase sigma factor for flagellar operon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MNREELIKENMPLVKSIARKFFIPGKGFEYQDLVNSGVIGLIDAINKFDAEKGAKFSSYSYIKIKSAILDEIRNQSPISK
HNLTKVNKYNRVVEKLQSKLLREPTSYEIAKELKVSEKELHDIESNIDMLNIVSLNYVIFEDTNETVQDVISDREEEAPE
NIIEEEEKLEILSKAISNLNEREKLILSLYYYEDLNLKEIGKVLGVSESRVSQLHRKSIRNLRNKIKELKYSI

Sequences:

>Translated_233_residues
MNREELIKENMPLVKSIARKFFIPGKGFEYQDLVNSGVIGLIDAINKFDAEKGAKFSSYSYIKIKSAILDEIRNQSPISK
HNLTKVNKYNRVVEKLQSKLLREPTSYEIAKELKVSEKELHDIESNIDMLNIVSLNYVIFEDTNETVQDVISDREEEAPE
NIIEEEEKLEILSKAISNLNEREKLILSLYYYEDLNLKEIGKVLGVSESRVSQLHRKSIRNLRNKIKELKYSI
>Mature_233_residues
MNREELIKENMPLVKSIARKFFIPGKGFEYQDLVNSGVIGLIDAINKFDAEKGAKFSSYSYIKIKSAILDEIRNQSPISK
HNLTKVNKYNRVVEKLQSKLLREPTSYEIAKELKVSEKELHDIESNIDMLNIVSLNYVIFEDTNETVQDVISDREEEAPE
NIIEEEEKLEILSKAISNLNEREKLILSLYYYEDLNLKEIGKVLGVSESRVSQLHRKSIRNLRNKIKELKYSI

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=237, Percent_Identity=33.7552742616034, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1789098, Length=233, Percent_Identity=31.3304721030043, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789448, Length=233, Percent_Identity=29.6137339055794, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789871, Length=240, Percent_Identity=25.8333333333333, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 27040; Mature: 27040

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNREELIKENMPLVKSIARKFFIPGKGFEYQDLVNSGVIGLIDAINKFDAEKGAKFSSYS
CCHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCH
YIKIKSAILDEIRNQSPISKHNLTKVNKYNRVVEKLQSKLLREPTSYEIAKELKVSEKEL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
HDIESNIDMLNIVSLNYVIFEDTNETVQDVISDREEEAPENIIEEEEKLEILSKAISNLN
HHHHHCCCEEEEEEEEEEEEECCCHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHCCC
EREKLILSLYYYEDLNLKEIGKVLGVSESRVSQLHRKSIRNLRNKIKELKYSI
HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNREELIKENMPLVKSIARKFFIPGKGFEYQDLVNSGVIGLIDAINKFDAEKGAKFSSYS
CCHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCH
YIKIKSAILDEIRNQSPISKHNLTKVNKYNRVVEKLQSKLLREPTSYEIAKELKVSEKEL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
HDIESNIDMLNIVSLNYVIFEDTNETVQDVISDREEEAPENIIEEEEKLEILSKAISNLN
HHHHHCCCEEEEEEEEEEEEECCCHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHCCC
EREKLILSLYYYEDLNLKEIGKVLGVSESRVSQLHRKSIRNLRNKIKELKYSI
HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]