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The map label for this gene is ydcM [C]

Identifier: 126697787

GI number: 126697787

Start: 279343

End: 280506

Strand: Direct

Name: ydcM [C]

Synonym: CD0216

Alternate gene names: 126697787

Gene position: 279343-280506 (Clockwise)

Preceding gene: 126697786

Following gene: 126697789

Centisome position: 6.51

GC content: 27.66

Gene sequence:

>1164_bases
ATGATAAAAACTCATAGAGTGAAATTAAACCTAACTAGAACACAATTTGAATTAGTAAGGGAAAAGCAAATGGAAAGTGC
TAACTGTTGGAACTACATAGTTAACTTATCTAAAGAATACTATTTTGAACATAAACAATGGATTAAAAAGAATGATATAC
AAAAGTTAATCAAAGGTAAGTACAATCTTCATAGTCAAACTATTCAAGCTATATCAGATAAATTTGATGCAAATAGAAAG
ACTATATCAGAATTAAGAAAAAAAGGTAATACTAAAGCAAAATATCCATACAAGACTAAGAAATTTTATATAATACCTTT
TAAAGCTAGTGCTATTAATAGAAATGCTAAAGGCAACTTAAAATTATCAATGTCAAAAGGCAGGTATTTAGAATTAGATT
TTAATGTTGAGAATATAAAAACTGCTGAAATAGTATGGCGAAATGGATATTATTTATACTACACTTTTGACAATGAATTA
AATGGAGTTGTAGCCAAAGGCACTAATACCGTAGGTGTAGACTTAGGGGAAATACATTCGATAGCTAGTGTAACAAATGA
AGGTGTAGGGCTTATTCTATCTAATAGAGAAGGCAGAAGTATTAAACAATTTAGAAATAAGATGTATGCTTATATATCTA
AAAGATTAAGTAAATGTAAAAAAGGTAGTAGACAATCAAAGAAGTTATGGAGATTAAAAAATAAGATAAGAAGTAAAACA
GATAATCAGTTAATGAATTTATATCATCAAACAACTAGAAAGTTTATAGACTTTTGTGTAGAGCAGAAGGTATGTGAAAT
AGTTCTTGGGGATATAAAAGGGGTTGAAAAAGATACTAAGAAAAAGAAAAGATTAAACAGAGTTAATAGACAGAAAATAT
CTCAAATGGAGTATGGTCGAATAAAGGACTATATAAAATATAAAGCAAAAGAGCAAGGTATTGAAGTTAAGTTAGTTAAA
GAAAACTACACTTCTCAAACTTGCCCAAAGTGTTCTAAAAAACACAAACCAACTGGTAGAACTTATAGTTGTACTTGTGG
TTATGAAACTCATAGAGATATAGTTGGTGCTTGGAATATTTTAAATAAAAAGCATAAATATGGTTTAGTAGATTTTAGAA
TAAATCATAAGCAACCAATAAATTTAAAAGTATCTACCGTTTGA

Upstream 100 bases:

>100_bases
CTAGCATGTGGACTAATAGCTATTTTGTAGGTACTGTTGGTTCTGTGAGTTTAGAAGTAGTTAAACAATATATAGAAAAT
CAACAAGTTAGGACAAAGAA

Downstream 100 bases:

>100_bases
GCCATGTGTGGGCGAATAACTTTAAGGTAGTAGTGGCGAAGACACCGTCCGAAGTAGCTTGGCTTTGTAACCACCTCTGT
TGTACTGTTTAAGTATAAAT

Product: transposase

Products: NA

Alternate protein names: IS Element ISTsi3 OrfB Probably Transposase; Neutral Protease; Transposase IS; Transposase B; IS Element ISTsi1 OrfB Transposase; IS Element ISTsi1 OrfB Trasposase; Transposase OrfB For Insertion Sequence Element; ISSoc14 Transposase

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MIKTHRVKLNLTRTQFELVREKQMESANCWNYIVNLSKEYYFEHKQWIKKNDIQKLIKGKYNLHSQTIQAISDKFDANRK
TISELRKKGNTKAKYPYKTKKFYIIPFKASAINRNAKGNLKLSMSKGRYLELDFNVENIKTAEIVWRNGYYLYYTFDNEL
NGVVAKGTNTVGVDLGEIHSIASVTNEGVGLILSNREGRSIKQFRNKMYAYISKRLSKCKKGSRQSKKLWRLKNKIRSKT
DNQLMNLYHQTTRKFIDFCVEQKVCEIVLGDIKGVEKDTKKKKRLNRVNRQKISQMEYGRIKDYIKYKAKEQGIEVKLVK
ENYTSQTCPKCSKKHKPTGRTYSCTCGYETHRDIVGAWNILNKKHKYGLVDFRINHKQPINLKVSTV

Sequences:

>Translated_387_residues
MIKTHRVKLNLTRTQFELVREKQMESANCWNYIVNLSKEYYFEHKQWIKKNDIQKLIKGKYNLHSQTIQAISDKFDANRK
TISELRKKGNTKAKYPYKTKKFYIIPFKASAINRNAKGNLKLSMSKGRYLELDFNVENIKTAEIVWRNGYYLYYTFDNEL
NGVVAKGTNTVGVDLGEIHSIASVTNEGVGLILSNREGRSIKQFRNKMYAYISKRLSKCKKGSRQSKKLWRLKNKIRSKT
DNQLMNLYHQTTRKFIDFCVEQKVCEIVLGDIKGVEKDTKKKKRLNRVNRQKISQMEYGRIKDYIKYKAKEQGIEVKLVK
ENYTSQTCPKCSKKHKPTGRTYSCTCGYETHRDIVGAWNILNKKHKYGLVDFRINHKQPINLKVSTV
>Mature_387_residues
MIKTHRVKLNLTRTQFELVREKQMESANCWNYIVNLSKEYYFEHKQWIKKNDIQKLIKGKYNLHSQTIQAISDKFDANRK
TISELRKKGNTKAKYPYKTKKFYIIPFKASAINRNAKGNLKLSMSKGRYLELDFNVENIKTAEIVWRNGYYLYYTFDNEL
NGVVAKGTNTVGVDLGEIHSIASVTNEGVGLILSNREGRSIKQFRNKMYAYISKRLSKCKKGSRQSKKLWRLKNKIRSKT
DNQLMNLYHQTTRKFIDFCVEQKVCEIVLGDIKGVEKDTKKKKRLNRVNRQKISQMEYGRIKDYIKYKAKEQGIEVKLVK
ENYTSQTCPKCSKKHKPTGRTYSCTCGYETHRDIVGAWNILNKKHKYGLVDFRINHKQPINLKVSTV

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45448; Mature: 45448

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKTHRVKLNLTRTQFELVREKQMESANCWNYIVNLSKEYYFEHKQWIKKNDIQKLIKGK
CCCEEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
YNLHSQTIQAISDKFDANRKTISELRKKGNTKAKYPYKTKKFYIIPFKASAINRNAKGNL
CCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEHHHCCCCCCCCE
KLSMSKGRYLELDFNVENIKTAEIVWRNGYYLYYTFDNELNGVVAKGTNTVGVDLGEIHS
EEEECCCEEEEEECCCCCCEEEEEEEECCEEEEEEECCCCCCEEEECCCEECCCHHHHHH
IASVTNEGVGLILSNREGRSIKQFRNKMYAYISKRLSKCKKGSRQSKKLWRLKNKIRSKT
HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH
DNQLMNLYHQTTRKFIDFCVEQKVCEIVLGDIKGVEKDTKKKKRLNRVNRQKISQMEYGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IKDYIKYKAKEQGIEVKLVKENYTSQTCPKCSKKHKPTGRTYSCTCGYETHRDIVGAWNI
HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCCCCCCEEEEEECCCHHHHHHHHHHH
LNKKHKYGLVDFRINHKQPINLKVSTV
HCCCCCCCEEEEEECCCCCCCEEEEEC
>Mature Secondary Structure
MIKTHRVKLNLTRTQFELVREKQMESANCWNYIVNLSKEYYFEHKQWIKKNDIQKLIKGK
CCCEEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
YNLHSQTIQAISDKFDANRKTISELRKKGNTKAKYPYKTKKFYIIPFKASAINRNAKGNL
CCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEHHHCCCCCCCCE
KLSMSKGRYLELDFNVENIKTAEIVWRNGYYLYYTFDNELNGVVAKGTNTVGVDLGEIHS
EEEECCCEEEEEECCCCCCEEEEEEEECCEEEEEEECCCCCCEEEECCCEECCCHHHHHH
IASVTNEGVGLILSNREGRSIKQFRNKMYAYISKRLSKCKKGSRQSKKLWRLKNKIRSKT
HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH
DNQLMNLYHQTTRKFIDFCVEQKVCEIVLGDIKGVEKDTKKKKRLNRVNRQKISQMEYGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IKDYIKYKAKEQGIEVKLVKENYTSQTCPKCSKKHKPTGRTYSCTCGYETHRDIVGAWNI
HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCCCCCCEEEEEECCCHHHHHHHHHHH
LNKKHKYGLVDFRINHKQPINLKVSTV
HCCCCCCCEEEEEECCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA