| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is blaR1 [H]
Identifier: 126697754
GI number: 126697754
Start: 239189
End: 240322
Strand: Direct
Name: blaR1 [H]
Synonym: CD0181
Alternate gene names: 126697754
Gene position: 239189-240322 (Clockwise)
Preceding gene: 126697753
Following gene: 126697755
Centisome position: 5.58
GC content: 23.37
Gene sequence:
>1134_bases ATGTCTAACTTTATTCTAAATGGGATTTTTAGAACAGTTATAGTAAGTAGTCTAAGCATTCTTCTGATATTGATTTTCAA GAAAAATGTATTTAAAAGATTTAGCAAAAAATTTAATTATTATATATGGATGATAGTTGTTATTAAATTATTTTTACCAT TTACATATTATACTTTTACAATAAATATCTTGAGAAGTAAAAAACACATTAATATTAATAACATAAATTTAGAGGGATTT AATAATGTTTCAACTATAAGTAATAATATTATATTGTACACTTGGATTATAACTGTAGTAGTGTATTTAATTTACACTAT ATTTAAATATATAAAACTTAAAAATTTAATAAATGACTTATCTTATGATGTTGATGATAGAGAGATTGTAAATCTTTATA AAAATATATTAGAAGAATTTAATATAACAAAAGATATAAAACTCAAATACTCTTATGAAGTTGAAACACCAGCATTTTTT AATTCATGTGTGCTTTTGCCACCACATGAGTATAAATTGAAAGAGTTAGACTGGATTTTTAGACATGAGCTTATGCATTT TAAGAGTAGGGACCTTTATTTAAAGTATGTAATCCTGTTTTTAAAAACAGTATATTGGTTTAATCCATTTATATATATAA TGGATAAACATATAGATTTAGATTGTGAACTTTATTGTGATGAAAGAGTTTTAAAAAATCGAAATTCAGAGGAAAAAAAG GATTATGCTTTAACAATTCTAAATGCAATGAGAAAAGGTTCAAATACTTCAAATAAATTTATAGCTGGACTTCATAAGCA ATCTGATATTAAAAAGAGAGTTATGAATATGTTTAATGAAAAGTACAAGAATGGTATATTAATGGCATTAACTTTATGTT TATTATCTTCTATTACTTTTTTGAAGGTTAATTCAACTAGTATTGTTAATCTTAATGTATTACCTAAAGGATTTGAAGAC TTACGAACTGTTAGCAGTATACGTTTTTCAGTTATAGGATTTACATATGCAGATGCTCCTAAAAATATGAGGGAAGAATA TAAAATAAATTGTGAATCATTAGGTTTGATACCTAAAGACTCTGATAAAATAGAAGTTGGTATAGAATATTATGACAGTC TATTGAATGATTAA
Upstream 100 bases:
>100_bases CAAAAAATGTATCTTTTTAATAAATAAAGATAATATGAAAACTTAAAAGGTAAATAAACTTAAATATAAAATACTCTTAA ATAAGGTAGGAGAAAAATGT
Downstream 100 bases:
>100_bases ATAAATATTATTTTAACAGATATTAATTATAAAGTTTTGAATAGTAATTTGTTGAGAAATAAATATATCCTTATAAAAAT AGATACTTATATACCAAGAA
Product: membrane-associated metalloprotease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MSNFILNGIFRTVIVSSLSILLILIFKKNVFKRFSKKFNYYIWMIVVIKLFLPFTYYTFTINILRSKKHININNINLEGF NNVSTISNNIILYTWIITVVVYLIYTIFKYIKLKNLINDLSYDVDDREIVNLYKNILEEFNITKDIKLKYSYEVETPAFF NSCVLLPPHEYKLKELDWIFRHELMHFKSRDLYLKYVILFLKTVYWFNPFIYIMDKHIDLDCELYCDERVLKNRNSEEKK DYALTILNAMRKGSNTSNKFIAGLHKQSDIKKRVMNMFNEKYKNGILMALTLCLLSSITFLKVNSTSIVNLNVLPKGFED LRTVSSIRFSVIGFTYADAPKNMREEYKINCESLGLIPKDSDKIEVGIEYYDSLLND
Sequences:
>Translated_377_residues MSNFILNGIFRTVIVSSLSILLILIFKKNVFKRFSKKFNYYIWMIVVIKLFLPFTYYTFTINILRSKKHININNINLEGF NNVSTISNNIILYTWIITVVVYLIYTIFKYIKLKNLINDLSYDVDDREIVNLYKNILEEFNITKDIKLKYSYEVETPAFF NSCVLLPPHEYKLKELDWIFRHELMHFKSRDLYLKYVILFLKTVYWFNPFIYIMDKHIDLDCELYCDERVLKNRNSEEKK DYALTILNAMRKGSNTSNKFIAGLHKQSDIKKRVMNMFNEKYKNGILMALTLCLLSSITFLKVNSTSIVNLNVLPKGFED LRTVSSIRFSVIGFTYADAPKNMREEYKINCESLGLIPKDSDKIEVGIEYYDSLLND >Mature_376_residues SNFILNGIFRTVIVSSLSILLILIFKKNVFKRFSKKFNYYIWMIVVIKLFLPFTYYTFTINILRSKKHININNINLEGFN NVSTISNNIILYTWIITVVVYLIYTIFKYIKLKNLINDLSYDVDDREIVNLYKNILEEFNITKDIKLKYSYEVETPAFFN SCVLLPPHEYKLKELDWIFRHELMHFKSRDLYLKYVILFLKTVYWFNPFIYIMDKHIDLDCELYCDERVLKNRNSEEKKD YALTILNAMRKGSNTSNKFIAGLHKQSDIKKRVMNMFNEKYKNGILMALTLCLLSSITFLKVNSTSIVNLNVLPKGFEDL RTVSSIRFSVIGFTYADAPKNMREEYKINCESLGLIPKDSDKIEVGIEYYDSLLND
Specific function: BlaR1 is a potential penicillin-binding protein required for induction of beta-lactamase in Bacillus licheniformis [H]
COG id: COG4219
COG function: function code KT; Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M56 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001460 - InterPro: IPR008756 [H]
Pfam domain/function: PF05569 Peptidase_M56; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 44651; Mature: 44520
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNFILNGIFRTVIVSSLSILLILIFKKNVFKRFSKKFNYYIWMIVVIKLFLPFTYYTFT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEE INILRSKKHININNINLEGFNNVSTISNNIILYTWIITVVVYLIYTIFKYIKLKNLINDL EEEEECCCEECEEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SYDVDDREIVNLYKNILEEFNITKDIKLKYSYEVETPAFFNSCVLLPPHEYKLKELDWIF CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCHHHCCEEEECCCCCHHHHHHHHH RHELMHFKSRDLYLKYVILFLKTVYWFNPFIYIMDKHIDLDCELYCDERVLKNRNSEEKK HHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECHHHHCCCCCCHHH DYALTILNAMRKGSNTSNKFIAGLHKQSDIKKRVMNMFNEKYKNGILMALTLCLLSSITF HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEE LKVNSTSIVNLNVLPKGFEDLRTVSSIRFSVIGFTYADAPKNMREEYKINCESLGLIPKD EEECCCEEEEEEECCCCHHHHHHHHHHHHHEEEEEECCCCHHHHHHHCCCHHHCCCCCCC SDKIEVGIEYYDSLLND CCCEEEEHHHHHHHHCC >Mature Secondary Structure SNFILNGIFRTVIVSSLSILLILIFKKNVFKRFSKKFNYYIWMIVVIKLFLPFTYYTFT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEE INILRSKKHININNINLEGFNNVSTISNNIILYTWIITVVVYLIYTIFKYIKLKNLINDL EEEEECCCEECEEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SYDVDDREIVNLYKNILEEFNITKDIKLKYSYEVETPAFFNSCVLLPPHEYKLKELDWIF CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCHHHCCEEEECCCCCHHHHHHHHH RHELMHFKSRDLYLKYVILFLKTVYWFNPFIYIMDKHIDLDCELYCDERVLKNRNSEEKK HHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECHHHHCCCCCCHHH DYALTILNAMRKGSNTSNKFIAGLHKQSDIKKRVMNMFNEKYKNGILMALTLCLLSSITF HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEE LKVNSTSIVNLNVLPKGFEDLRTVSSIRFSVIGFTYADAPKNMREEYKINCESLGLIPKD EEECCCEEEEEEECCCCHHHHHHHHHHHHHEEEEEECCCCHHHHHHHCCCHHHCCCCCCC SDKIEVGIEYYDSLLND CCCEEEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3040663; 3260234; 2404938 [H]