| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is cooS [H]
Identifier: 126697747
GI number: 126697747
Start: 230672
End: 232573
Strand: Direct
Name: cooS [H]
Synonym: CD0174
Alternate gene names: 126697747
Gene position: 230672-232573 (Clockwise)
Preceding gene: 126697746
Following gene: 126697748
Centisome position: 5.38
GC content: 33.6
Gene sequence:
>1902_bases ATGGCTTGTAACACTTGTAAAATGTGCGAAAGTGCAGACAAGAAATTAGAAAGTTTTGTAGCTTCAAAGGATGTTGAAAC AGCATTTCATAGAACAGAAGATCAGAAAGTTAAGTGTGGTTTTGGACTTCAGGGGGTTTGTTGTAGACTCTGTTCAAATG GACCATGTAGAGTAACTCCTAAATCACCAAGAGGTATATGTGGAGCAGATGCAGACACTATAGTAGCAAGAAACTTTTTA AGAGCAGTAGCATCAGGAGCAGCTTGTTATTTACATGTGGTAGAAAATACAGCTAAGAATTTAAAAAATGTTGGAATAAC TAAAGGTGTTGTTAAAGGAGAAAAAACATTAAATCAATTAGCAGAGATGTTTGGAATAGAAAGTGATGAAAAGTATGATA AATGTATAAAGGTTGCAGACAAAGTTATCAACGATTTGTATAAATCAAGAGATGATAAAATGGAATTAGTAGAAAAAATA GCTTATGCACCTAGAGTGAAAAAGTGGAAAGAGTTAGGTATAATGCCTGGTGGTGCAAAGTCAGAAGTTTTTGATGCAAT AGTAAAATCATCAACAAATTTAAATAGTGACCCAGTAGACATGCTAGTTAATTGTTTGAACTTAGGTATATCAACAGGAT TATATGGTCTTACACTAACTAATCTTTTAAATGATGTTATGTTGGGAGAACCAGTTATAAGAATGGCTCCTGTAGGATTT AATGTAATAGACCCAGACTACATAAATATAATGATAACAGGCCATCAACATTCAACATTTGCAAATTTCCAAGATAGATT AAAAGATGAAGATGTTATAAAATTAGCTCAATCTGTTGGTGCAAAAGGATTTAAGCTAGTAGGATGTACATGTGTTGGTC AAGATTTACAATTAAGAGGAGAACATTATCAAGAAGTATTTGCTGGACATGCAGGTAACAATTTTACAAGTGAGGCTGTT TTATCAACTGGAGCAATAGATATAGTTCTTTCAGAATTTAACTGTACTATACCAGGGCTTGAACCAATAGCAGATAAATA TAAAGTAAAAATGGTTTGTTTAGATGATGTTGCTAAAAAAGCGAATGCAGAATACATAGGTTTAGACAGAAGTAAATTAG ATGAACTTAGTAACACTTTAATAGAAAAAGCATTGGAGTCTTATAAGGAGAGAAGAGGAAGTATTGAAATAGATATACCA AAAGACCATGGATTTGAACAATCTTTAACTGGTGTAAGTGAAAAGAACCTGAAAGCGTTTTTAGGAGATTCATGGAAACC TCTTATTAATTTAATTGCAGAAGGAAAAATTAAAGGTGTTGCAGCTGTTGTAGGATGTTCAAATATGACAGCAGGAGGAC ATGATGTAAATACTGTTGAACTTACTAAAGAATTGATTAAAAAAGATATAATAGTACTATCTGCAGGATGTTCTACTGGA GGATTAGAAAATGTTGGTCTTATGTCACCTGGAGCAGAAGAATTAGCAGGAGAAAACTTAAAAGAAGTATGTAAGACTTT AGGAATACCACCAGTATTAAACTTTGGACCATGTCTAGCTATAGGAAGACTAGAAATAGTAGCAACAGAATTAGCAGCTG AACTTGGAATTGACCTACCACAATTACCATTAGTGCTTTCAGCTCCACAATGGTTGGAAGAACAAGCATTAGCTGATGGA GCGTTTGGTCTTGCCCTTGGCTTACCTCTTCATTTAGCTTTACCTCCATTTATAACAGGAGGAAAATTGGTGACAGAAGT ATTAACAGAAAAATTAAAAGACTTAACAGGAGGACATGTTATAGTGAATCCAGACCCTAAATCTTCAGCTAATCAATTAG AAGAAATAATAATAGATAGAAGAAAAAATTTAGGGTTAAAGGATGTGGAATGCAATGCATAG
Upstream 100 bases:
>100_bases TGGTATTAAATAAGTAGATTTTAATAGTTAAATTATAGTCAATTATAATAAAGCTATTTAATCTACTTTTTTAATATAAA AATATAAGGGGGAATTTGTA
Downstream 100 bases:
>100_bases AATTTTTATAAATAAAGATTTATGTACAGGATGTAAGAGCTGTGTACTAGCATGTATGCTAAAACACAATAAAGATTATG ACATGTACACTCTTGATTTA
Product: oxidoreductase, acetyl-CoA synthase subunit
Products: NA
Alternate protein names: CODH [H]
Number of amino acids: Translated: 633; Mature: 632
Protein sequence:
>633_residues MACNTCKMCESADKKLESFVASKDVETAFHRTEDQKVKCGFGLQGVCCRLCSNGPCRVTPKSPRGICGADADTIVARNFL RAVASGAACYLHVVENTAKNLKNVGITKGVVKGEKTLNQLAEMFGIESDEKYDKCIKVADKVINDLYKSRDDKMELVEKI AYAPRVKKWKELGIMPGGAKSEVFDAIVKSSTNLNSDPVDMLVNCLNLGISTGLYGLTLTNLLNDVMLGEPVIRMAPVGF NVIDPDYINIMITGHQHSTFANFQDRLKDEDVIKLAQSVGAKGFKLVGCTCVGQDLQLRGEHYQEVFAGHAGNNFTSEAV LSTGAIDIVLSEFNCTIPGLEPIADKYKVKMVCLDDVAKKANAEYIGLDRSKLDELSNTLIEKALESYKERRGSIEIDIP KDHGFEQSLTGVSEKNLKAFLGDSWKPLINLIAEGKIKGVAAVVGCSNMTAGGHDVNTVELTKELIKKDIIVLSAGCSTG GLENVGLMSPGAEELAGENLKEVCKTLGIPPVLNFGPCLAIGRLEIVATELAAELGIDLPQLPLVLSAPQWLEEQALADG AFGLALGLPLHLALPPFITGGKLVTEVLTEKLKDLTGGHVIVNPDPKSSANQLEEIIIDRRKNLGLKDVECNA
Sequences:
>Translated_633_residues MACNTCKMCESADKKLESFVASKDVETAFHRTEDQKVKCGFGLQGVCCRLCSNGPCRVTPKSPRGICGADADTIVARNFL RAVASGAACYLHVVENTAKNLKNVGITKGVVKGEKTLNQLAEMFGIESDEKYDKCIKVADKVINDLYKSRDDKMELVEKI AYAPRVKKWKELGIMPGGAKSEVFDAIVKSSTNLNSDPVDMLVNCLNLGISTGLYGLTLTNLLNDVMLGEPVIRMAPVGF NVIDPDYINIMITGHQHSTFANFQDRLKDEDVIKLAQSVGAKGFKLVGCTCVGQDLQLRGEHYQEVFAGHAGNNFTSEAV LSTGAIDIVLSEFNCTIPGLEPIADKYKVKMVCLDDVAKKANAEYIGLDRSKLDELSNTLIEKALESYKERRGSIEIDIP KDHGFEQSLTGVSEKNLKAFLGDSWKPLINLIAEGKIKGVAAVVGCSNMTAGGHDVNTVELTKELIKKDIIVLSAGCSTG GLENVGLMSPGAEELAGENLKEVCKTLGIPPVLNFGPCLAIGRLEIVATELAAELGIDLPQLPLVLSAPQWLEEQALADG AFGLALGLPLHLALPPFITGGKLVTEVLTEKLKDLTGGHVIVNPDPKSSANQLEEIIIDRRKNLGLKDVECNA >Mature_632_residues ACNTCKMCESADKKLESFVASKDVETAFHRTEDQKVKCGFGLQGVCCRLCSNGPCRVTPKSPRGICGADADTIVARNFLR AVASGAACYLHVVENTAKNLKNVGITKGVVKGEKTLNQLAEMFGIESDEKYDKCIKVADKVINDLYKSRDDKMELVEKIA YAPRVKKWKELGIMPGGAKSEVFDAIVKSSTNLNSDPVDMLVNCLNLGISTGLYGLTLTNLLNDVMLGEPVIRMAPVGFN VIDPDYINIMITGHQHSTFANFQDRLKDEDVIKLAQSVGAKGFKLVGCTCVGQDLQLRGEHYQEVFAGHAGNNFTSEAVL STGAIDIVLSEFNCTIPGLEPIADKYKVKMVCLDDVAKKANAEYIGLDRSKLDELSNTLIEKALESYKERRGSIEIDIPK DHGFEQSLTGVSEKNLKAFLGDSWKPLINLIAEGKIKGVAAVVGCSNMTAGGHDVNTVELTKELIKKDIIVLSAGCSTGG LENVGLMSPGAEELAGENLKEVCKTLGIPPVLNFGPCLAIGRLEIVATELAAELGIDLPQLPLVLSAPQWLEEQALADGA FGLALGLPLHLALPPFITGGKLVTEVLTEKLKDLTGGHVIVNPDPKSSANQLEEIIIDRRKNLGLKDVECNA
Specific function: Unknown
COG id: COG1151
COG function: function code C; 6Fe-6S prismane cluster-containing protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Ni-containing carbon monoxide dehydrogenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016101 - InterPro: IPR010047 - InterPro: IPR004137 - InterPro: IPR011254 - InterPro: IPR016099 [H]
Pfam domain/function: PF03063 Prismane [H]
EC number: =1.2.99.2 [H]
Molecular weight: Translated: 68144; Mature: 68013
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MACNTCKMCESADKKLESFVASKDVETAFHRTEDQKVKCGFGLQGVCCRLCSNGPCRVTP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCEEECC KSPRGICGADADTIVARNFLRAVASGAACYLHVVENTAKNLKNVGITKGVVKGEKTLNQL CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH AEMFGIESDEKYDKCIKVADKVINDLYKSRDDKMELVEKIAYAPRVKKWKELGIMPGGAK HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCH SEVFDAIVKSSTNLNSDPVDMLVNCLNLGISTGLYGLTLTNLLNDVMLGEPVIRMAPVGF HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCCC NVIDPDYINIMITGHQHSTFANFQDRLKDEDVIKLAQSVGAKGFKLVGCTCVGQDLQLRG CCCCCCEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEEECCCHHHCH EHYQEVFAGHAGNNFTSEAVLSTGAIDIVLSEFNCTIPGLEPIADKYKVKMVCLDDVAKK HHHHHHHHCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCHHHCCCCEEEEEEHHHHHHH ANAEYIGLDRSKLDELSNTLIEKALESYKERRGSIEIDIPKDHGFEQSLTGVSEKNLKAF CCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCCCHHHHHHH LGDSWKPLINLIAEGKIKGVAAVVGCSNMTAGGHDVNTVELTKELIKKDIIVLSAGCSTG HCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCC GLENVGLMSPGAEELAGENLKEVCKTLGIPPVLNFGPCLAIGRLEIVATELAAELGIDLP CCCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC QLPLVLSAPQWLEEQALADGAFGLALGLPLHLALPPFITGGKLVTEVLTEKLKDLTGGHV CCCCEECCHHHHHHHHHHCCCHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEE IVNPDPKSSANQLEEIIIDRRKNLGLKDVECNA EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure ACNTCKMCESADKKLESFVASKDVETAFHRTEDQKVKCGFGLQGVCCRLCSNGPCRVTP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCEEECC KSPRGICGADADTIVARNFLRAVASGAACYLHVVENTAKNLKNVGITKGVVKGEKTLNQL CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH AEMFGIESDEKYDKCIKVADKVINDLYKSRDDKMELVEKIAYAPRVKKWKELGIMPGGAK HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCH SEVFDAIVKSSTNLNSDPVDMLVNCLNLGISTGLYGLTLTNLLNDVMLGEPVIRMAPVGF HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCCC NVIDPDYINIMITGHQHSTFANFQDRLKDEDVIKLAQSVGAKGFKLVGCTCVGQDLQLRG CCCCCCEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEEECCCHHHCH EHYQEVFAGHAGNNFTSEAVLSTGAIDIVLSEFNCTIPGLEPIADKYKVKMVCLDDVAKK HHHHHHHHCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCHHHCCCCEEEEEEHHHHHHH ANAEYIGLDRSKLDELSNTLIEKALESYKERRGSIEIDIPKDHGFEQSLTGVSEKNLKAF CCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCCCHHHHHHH LGDSWKPLINLIAEGKIKGVAAVVGCSNMTAGGHDVNTVELTKELIKKDIIVLSAGCSTG HCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCC GLENVGLMSPGAEELAGENLKEVCKTLGIPPVLNFGPCLAIGRLEIVATELAAELGIDLP CCCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC QLPLVLSAPQWLEEQALADGAFGLALGLPLHLALPPFITGGKLVTEVLTEKLKDLTGGHV CCCCEECCHHHHHHHHHHCCCHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEE IVNPDPKSSANQLEEIIIDRRKNLGLKDVECNA EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087; 11841199 [H]