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The map label for this gene is ygfS [H]

Identifier: 126697748

GI number: 126697748

Start: 232566

End: 233039

Strand: Direct

Name: ygfS [H]

Synonym: CD0175

Alternate gene names: 126697748

Gene position: 232566-233039 (Clockwise)

Preceding gene: 126697747

Following gene: 126697749

Centisome position: 5.42

GC content: 32.91

Gene sequence:

>474_bases
ATGCATAGAATTTTTATAAATAAAGATTTATGTACAGGATGTAAGAGCTGTGTACTAGCATGTATGCTAAAACACAATAA
AGATTATGACATGTACACTCTTGATTTAGAAAATATAGATAATGATAGTAGAGGGCATATAGAATTAGATAGTAGACATA
ATAATCCAGTTCCAATTCTTTGTAGACACTGTGATGAACCTGAATGTGTATTAGCATGTATGAGTGGTGCAATGCATAAA
GATAGTGAAAGTGGAATCGTTTCATATGATGAAGAGAAATGTGGTTCATGTTATATGTGTGTAATGTCTTGTCCATATGG
ATTATTAAAGCCAGATGATAGAAGCAAGCAGAACATACTTAAATGTGATTTATGTAAAGATGAGGAGTATCCTAGATGTG
TAGCTAATTGCCCAAGTGGAGCAATTGAATTACAGAAGGAGGAAAATGATGAATTATGTAGTGTTAGGGGCTAG

Upstream 100 bases:

>100_bases
CATGTTATAGTGAATCCAGACCCTAAATCTTCAGCTAATCAATTAGAAGAAATAATAATAGATAGAAGAAAAAATTTAGG
GTTAAAGGATGTGGAATGCA

Downstream 100 bases:

>100_bases
TGCAGCTGGTATAAATGCAGTAAAAACATTAAGAGAATTAGATAAAGATTCAAATATAGTAGTAATTTCTAAAGATGAAA
ACGTATATTCAAGATGTATG

Product: oxidoreductase, electron transfer subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MHRIFINKDLCTGCKSCVLACMLKHNKDYDMYTLDLENIDNDSRGHIELDSRHNNPVPILCRHCDEPECVLACMSGAMHK
DSESGIVSYDEEKCGSCYMCVMSCPYGLLKPDDRSKQNILKCDLCKDEEYPRCVANCPSGAIELQKEENDELCSVRG

Sequences:

>Translated_157_residues
MHRIFINKDLCTGCKSCVLACMLKHNKDYDMYTLDLENIDNDSRGHIELDSRHNNPVPILCRHCDEPECVLACMSGAMHK
DSESGIVSYDEEKCGSCYMCVMSCPYGLLKPDDRSKQNILKCDLCKDEEYPRCVANCPSGAIELQKEENDELCSVRG
>Mature_157_residues
MHRIFINKDLCTGCKSCVLACMLKHNKDYDMYTLDLENIDNDSRGHIELDSRHNNPVPILCRHCDEPECVLACMSGAMHK
DSESGIVSYDEEKCGSCYMCVMSCPYGLLKPDDRSKQNILKCDLCKDEEYPRCVANCPSGAIELQKEENDELCSVRG

Specific function: Unknown

COG id: COG1142

COG function: function code C; Fe-S-cluster-containing hydrogenase components 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI87082179, Length=155, Percent_Identity=32.258064516129, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1787122, Length=168, Percent_Identity=36.9047619047619, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI87082180, Length=140, Percent_Identity=33.5714285714286, Blast_Score=78, Evalue=2e-16,
Organism=Escherichia coli, GI1787872, Length=154, Percent_Identity=37.6623376623377, Blast_Score=78, Evalue=2e-16,
Organism=Escherichia coli, GI1788811, Length=148, Percent_Identity=28.3783783783784, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI1789067, Length=158, Percent_Identity=31.0126582278481, Blast_Score=71, Evalue=3e-14,
Organism=Escherichia coli, GI1789370, Length=170, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=6e-14,
Organism=Escherichia coli, GI2367245, Length=146, Percent_Identity=28.0821917808219, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1787749, Length=173, Percent_Identity=27.1676300578035, Blast_Score=63, Evalue=9e-12,
Organism=Escherichia coli, GI1787478, Length=104, Percent_Identity=35.5769230769231, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1790326, Length=170, Percent_Identity=30, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI226510944, Length=154, Percent_Identity=28.5714285714286, Blast_Score=61, Evalue=4e-11,
Organism=Escherichia coli, GI2367345, Length=145, Percent_Identity=28.9655172413793, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 17752; Mature: 17752

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

10.8 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
15.3 %Cys+Met (Translated Protein)
10.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
15.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRIFINKDLCTGCKSCVLACMLKHNKDYDMYTLDLENIDNDSRGHIELDSRHNNPVPIL
CCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCEEE
CRHCDEPECVLACMSGAMHKDSESGIVSYDEEKCGSCYMCVMSCPYGLLKPDDRSKQNIL
EECCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEE
KCDLCKDEEYPRCVANCPSGAIELQKEENDELCSVRG
EEECCCCCCCCHHHHCCCCCEEEEECCCCCCEECCCC
>Mature Secondary Structure
MHRIFINKDLCTGCKSCVLACMLKHNKDYDMYTLDLENIDNDSRGHIELDSRHNNPVPIL
CCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCEEE
CRHCDEPECVLACMSGAMHKDSESGIVSYDEEKCGSCYMCVMSCPYGLLKPDDRSKQNIL
EECCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEE
KCDLCKDEEYPRCVANCPSGAIELQKEENDELCSVRG
EEECCCCCCCCHHHHCCCCCEEEEECCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]