| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126697598
Identifier: 126697598
GI number: 126697598
Start: 52724
End: 53890
Strand: Direct
Name: 126697598
Synonym: CD0032
Alternate gene names: NA
Gene position: 52724-53890 (Clockwise)
Preceding gene: 126697596
Following gene: 126697599
Centisome position: 1.23
GC content: 33.08
Gene sequence:
>1167_bases GTGTATATAAAAGGTGTAAATTTAGGAGGTTGGTTAGTTTTAGAAAAATGGATGACCTCAAGTTTATTTGAAGGCACAGA AGCTGAAGATGAATACTATTTACCAAGACAGCTTTCAAGAGAGGCATATGAATCTAGAATTAAGACTCATCGTAGTGAAT ACATCACAGAGAGAGATTTTGCAACGATTAAATCTATGGGATTTAATTCAGTTCGTATACCAGTACCATACTTTATTTTT GGAGATTGTGAACCATTCATAGGATGTGTTAAAGAACTTGATAAAGCATTTGCTTGGGCAGATAAGTATGGGCTTAGTAT ATTGATAGACTTACATACAGTTCCAGGAAGCCAAAATGGATTTGATAATGGAGGAATATCAGGTATATGTAGCTGGTCAC AAAATCCAGAATATGTAGCGTTTACATTAAATGTATTAGAAAGACTTGCAAAACGTTATGGGATGAGGCATGAATTGTAT GGAATCCAAATTTTAAATGAGCCTATAACAGAAAGAATGTGGAACATAATGAATGTTCCAAATCGGTTTAAGGCTGTAGA TAAGGAGATGGCAAGGGGGAGTAAACCTAATTCATTAGAGTTTTTACGTGATTTTTATATAAAAGCATATAGGGTAATGC GTCCTTATATGAGAGAGGAAAACGTTATAGTGTTTCATGATGCATTTGAATTAAAAGCATGGAAAGACTTTATGAGAGAG GAAGAATTTAAAAATGTTGTTCTAGATACACACCAATATTTGATGTTAGCTGAAGCAGATGGATGTGAACAAAGTATTGA TAGCTATCTCAAATATATTAGAGAAAATTATGCTAAAGATATTTTACAAATGCAAAAATATTTTCCTGTTATATGTGGGG AGTGGAGCTTATTTAATTCATATGCTTGTGGTATAGATACAAATGGAGGTCAATCACCTCTAAATGGGATTGAATCAAAT ATAGATAAATTATCAAAAGACGATAAAAGAGAATTATATAGGAAGATAGCAAAAGCACAGCTTGATGCATGGAGAAATGG AAGTGGTCACTACTATTGGAATTATAAGTTATTACTAGATACAGTTAATGAAGAAGGTTGGATAGGATGGGATAGTTGGG ACCTAGGCAAATGTGTAGCTCAAGAATGGTATCCTATAGAATATTAA
Upstream 100 bases:
>100_bases ATCAAATATAATAACTGTATATTAAAATAACTTAAAAAAATTATTTTATTATAAGTGCAAAATATACCTATTTAAATAAG ATAAGAGGGGAGGATTTTAT
Downstream 100 bases:
>100_bases ACTAAAATTGGAGGAAAAGATATGATTAAAAACCCTATACTTCCAGGTTTTAATCCAGATCCTTGTATTTGTAGAAAGGG AGATGATTATTATCTTGTAG
Product: beta-glucosidase
Products: NA
Alternate protein names: Endoglucanase; Beta-Glucosidase; Endoglucanase-Like Protein; Glucan Exo-13-Beta Glucosidase Glu5A; Glycoside Hydrolase Family 5 Domain Protein; Glycoside Hydrolase Family Protein; Coagulation Factor 5/8 Type Domain-Containing Protein; Cellulase; Glycoside Hydrolase; Beta-1 3-Exoglucanase
Number of amino acids: Translated: 388; Mature: 388
Protein sequence:
>388_residues MYIKGVNLGGWLVLEKWMTSSLFEGTEAEDEYYLPRQLSREAYESRIKTHRSEYITERDFATIKSMGFNSVRIPVPYFIF GDCEPFIGCVKELDKAFAWADKYGLSILIDLHTVPGSQNGFDNGGISGICSWSQNPEYVAFTLNVLERLAKRYGMRHELY GIQILNEPITERMWNIMNVPNRFKAVDKEMARGSKPNSLEFLRDFYIKAYRVMRPYMREENVIVFHDAFELKAWKDFMRE EEFKNVVLDTHQYLMLAEADGCEQSIDSYLKYIRENYAKDILQMQKYFPVICGEWSLFNSYACGIDTNGGQSPLNGIESN IDKLSKDDKRELYRKIAKAQLDAWRNGSGHYYWNYKLLLDTVNEEGWIGWDSWDLGKCVAQEWYPIEY
Sequences:
>Translated_388_residues MYIKGVNLGGWLVLEKWMTSSLFEGTEAEDEYYLPRQLSREAYESRIKTHRSEYITERDFATIKSMGFNSVRIPVPYFIF GDCEPFIGCVKELDKAFAWADKYGLSILIDLHTVPGSQNGFDNGGISGICSWSQNPEYVAFTLNVLERLAKRYGMRHELY GIQILNEPITERMWNIMNVPNRFKAVDKEMARGSKPNSLEFLRDFYIKAYRVMRPYMREENVIVFHDAFELKAWKDFMRE EEFKNVVLDTHQYLMLAEADGCEQSIDSYLKYIRENYAKDILQMQKYFPVICGEWSLFNSYACGIDTNGGQSPLNGIESN IDKLSKDDKRELYRKIAKAQLDAWRNGSGHYYWNYKLLLDTVNEEGWIGWDSWDLGKCVAQEWYPIEY >Mature_388_residues MYIKGVNLGGWLVLEKWMTSSLFEGTEAEDEYYLPRQLSREAYESRIKTHRSEYITERDFATIKSMGFNSVRIPVPYFIF GDCEPFIGCVKELDKAFAWADKYGLSILIDLHTVPGSQNGFDNGGISGICSWSQNPEYVAFTLNVLERLAKRYGMRHELY GIQILNEPITERMWNIMNVPNRFKAVDKEMARGSKPNSLEFLRDFYIKAYRVMRPYMREENVIVFHDAFELKAWKDFMRE EEFKNVVLDTHQYLMLAEADGCEQSIDSYLKYIRENYAKDILQMQKYFPVICGEWSLFNSYACGIDTNGGQSPLNGIESN IDKLSKDDKRELYRKIAKAQLDAWRNGSGHYYWNYKLLLDTVNEEGWIGWDSWDLGKCVAQEWYPIEY
Specific function: Unknown
COG id: COG2730
COG function: function code G; Endoglucanase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6323331, Length=388, Percent_Identity=32.4742268041237, Blast_Score=169, Evalue=5e-43, Organism=Saccharomyces cerevisiae, GI6324764, Length=390, Percent_Identity=30.2564102564103, Blast_Score=147, Evalue=3e-36, Organism=Saccharomyces cerevisiae, GI6320467, Length=418, Percent_Identity=25.5980861244019, Blast_Score=112, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6319530, Length=291, Percent_Identity=23.7113402061856, Blast_Score=64, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45485; Mature: 45485
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYIKGVNLGGWLVLEKWMTSSLFEGTEAEDEYYLPRQLSREAYESRIKTHRSEYITERDF CEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ATIKSMGFNSVRIPVPYFIFGDCEPFIGCVKELDKAFAWADKYGLSILIDLHTVPGSQNG HHHHHCCCCCEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC FDNGGISGICSWSQNPEYVAFTLNVLERLAKRYGMRHELYGIQILNEPITERMWNIMNVP CCCCCCCEEECCCCCCCEEEEHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHHHHHCCC NRFKAVDKEMARGSKPNSLEFLRDFYIKAYRVMRPYMREENVIVFHDAFELKAWKDFMRE HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH EEFKNVVLDTHQYLMLAEADGCEQSIDSYLKYIRENYAKDILQMQKYFPVICGEWSLFNS HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHCC YACGIDTNGGQSPLNGIESNIDKLSKDDKRELYRKIAKAQLDAWRNGSGHYYWNYKLLLD EECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEE TVNEEGWIGWDSWDLGKCVAQEWYPIEY ECCCCCCCCCCCCCHHHHHHHCCCCCCC >Mature Secondary Structure MYIKGVNLGGWLVLEKWMTSSLFEGTEAEDEYYLPRQLSREAYESRIKTHRSEYITERDF CEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ATIKSMGFNSVRIPVPYFIFGDCEPFIGCVKELDKAFAWADKYGLSILIDLHTVPGSQNG HHHHHCCCCCEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC FDNGGISGICSWSQNPEYVAFTLNVLERLAKRYGMRHELYGIQILNEPITERMWNIMNVP CCCCCCCEEECCCCCCCEEEEHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHHHHHCCC NRFKAVDKEMARGSKPNSLEFLRDFYIKAYRVMRPYMREENVIVFHDAFELKAWKDFMRE HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH EEFKNVVLDTHQYLMLAEADGCEQSIDSYLKYIRENYAKDILQMQKYFPVICGEWSLFNS HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHCC YACGIDTNGGQSPLNGIESNIDKLSKDDKRELYRKIAKAQLDAWRNGSGHYYWNYKLLLD EECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEE TVNEEGWIGWDSWDLGKCVAQEWYPIEY ECCCCCCCCCCCCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA