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The map label for this gene is xylS3 [H]

Identifier: 126447895

GI number: 126447895

Start: 198330

End: 199334

Strand: Reverse

Name: xylS3 [H]

Synonym: BMA10247_A0233

Alternate gene names: 126447895

Gene position: 199334-198330 (Counterclockwise)

Preceding gene: 126446143

Following gene: 126446525

Centisome position: 8.47

GC content: 71.74

Gene sequence:

>1005_bases
ATGTTCAGGACGCCGGCGCTTTGTGCGAGGCAGACGATCATGCCCCCGACCCCATTCGATCCGCTCGCGTTGCGCGAGCA
CCGGCTGTTCGAATCGCGCGACCTCGACGAGACGCGCGAGCGGATCTCGCGCGTGATGCAGCCGCATGCGCTGTTGCCGG
ACGGCTCGCGGCACGGGCCGTCGCACATGGATTACGTGCGCCTCGGCGGGCTCGGCATCGGAACCATCGCGTTCGGCGAC
GCGATGCGGGTGCATCTCGATGCGGTGGACGGCTATCATCTGCTGATGTTTTGTCTGACGGGTTCCGCGCAGGTCCGCAC
GATGGGCCGCGCGTTCGACGTCGACGCGCACACGGGCGTGCTGTGCGCGCCGGGCGAGCCGTTCGACGCGCACCTGTCGC
GCGATTGCGAGCAGTTCGTCCTCCGTATCGATGCGGCGACCCTCGCCGCGCACGCGGGCGACGCGGCGGCGGCGCTCGAT
CCCGTGATCGGCATCGACGATTCGGCGCTGAGCGCGTGGATGCAGCAACTGCAGCTCGTCGCGCGCTCGCCGGAACTGCT
CGCGAGCGCAAGCGCGAACCCGCGCGTCGCAACGCGGCTCGAACAGTTGCTGCTCGATCTGCTGATCGACGGGCATCCGC
CCGCCGCGCCGCCCGCGCGGCGCGCCGATCCGGCGCCAGGCTTCGTGCGGCGCGCGCAGGAGTTCATCGGCGCGCAGCTC
GCCCAGCCGCTGCAGCTCGCCGACATCGCGCAGGCCGCGGGCGTACCCGAGCGCACGCTGCGCGACGGCTTCCTGCAGTT
TCGCGGGACGAGCCCGATGCAATACCTGCGCCAGCGGCGCCTCGAGCGCGCGCGCGAGCTGCTGCGCACGGCCGCGCCCG
AGCGCCGGATCGCCGAGATCGCGCTCGATTGCGGTTTCGCGCACTTCGGCCGCTTCGCGATCGCCTACCGCGAACGGTTC
GGCGAGCTGCCGTCCGCGACGCTCGCCGATCGGCGCGACGCCTGA

Upstream 100 bases:

>100_bases
CGTCTATCCGGAAAGTGCGGTTGCGGCGGCGCAGTATCCACTTCCGGCGGATTTCCGCGTTACGATGCGCGCATCAGACA
TGCCGCCCGGCCGACGAACG

Downstream 100 bases:

>100_bases
TTCCTTCGTTCTCCTTTCGCCTCACGCCCGCCGGAGCGCGCGGCACGCGTCAGTGGCCCGCCATCAGTTTGCGCGCGAGC
GAGCAGAACAGCGCGGTCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MFRTPALCARQTIMPPTPFDPLALREHRLFESRDLDETRERISRVMQPHALLPDGSRHGPSHMDYVRLGGLGIGTIAFGD
AMRVHLDAVDGYHLLMFCLTGSAQVRTMGRAFDVDAHTGVLCAPGEPFDAHLSRDCEQFVLRIDAATLAAHAGDAAAALD
PVIGIDDSALSAWMQQLQLVARSPELLASASANPRVATRLEQLLLDLLIDGHPPAAPPARRADPAPGFVRRAQEFIGAQL
AQPLQLADIAQAAGVPERTLRDGFLQFRGTSPMQYLRQRRLERARELLRTAAPERRIAEIALDCGFAHFGRFAIAYRERF
GELPSATLADRRDA

Sequences:

>Translated_334_residues
MFRTPALCARQTIMPPTPFDPLALREHRLFESRDLDETRERISRVMQPHALLPDGSRHGPSHMDYVRLGGLGIGTIAFGD
AMRVHLDAVDGYHLLMFCLTGSAQVRTMGRAFDVDAHTGVLCAPGEPFDAHLSRDCEQFVLRIDAATLAAHAGDAAAALD
PVIGIDDSALSAWMQQLQLVARSPELLASASANPRVATRLEQLLLDLLIDGHPPAAPPARRADPAPGFVRRAQEFIGAQL
AQPLQLADIAQAAGVPERTLRDGFLQFRGTSPMQYLRQRRLERARELLRTAAPERRIAEIALDCGFAHFGRFAIAYRERF
GELPSATLADRRDA
>Mature_334_residues
MFRTPALCARQTIMPPTPFDPLALREHRLFESRDLDETRERISRVMQPHALLPDGSRHGPSHMDYVRLGGLGIGTIAFGD
AMRVHLDAVDGYHLLMFCLTGSAQVRTMGRAFDVDAHTGVLCAPGEPFDAHLSRDCEQFVLRIDAATLAAHAGDAAAALD
PVIGIDDSALSAWMQQLQLVARSPELLASASANPRVATRLEQLLLDLLIDGHPPAAPPARRADPAPGFVRRAQEFIGAQL
AQPLQLADIAQAAGVPERTLRDGFLQFRGTSPMQYLRQRRLERARELLRTAAPERRIAEIALDCGFAHFGRFAIAYRERF
GELPSATLADRRDA

Specific function: Regulatory protein of the TOL plasmid xyl operons. XylS activates the xylXYZLTEGFJQKIH operon required for the degradation of toluene, m-xylene and p-xylene [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788778, Length=166, Percent_Identity=26.5060240963855, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36674; Mature: 36674

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRTPALCARQTIMPPTPFDPLALREHRLFESRDLDETRERISRVMQPHALLPDGSRHGP
CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCC
SHMDYVRLGGLGIGTIAFGDAMRVHLDAVDGYHLLMFCLTGSAQVRTMGRAFDVDAHTGV
CCCCEEEECCCEEEHHHHCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCEEECCCCCCE
LCAPGEPFDAHLSRDCEQFVLRIDAATLAAHAGDAAAALDPVIGIDDSALSAWMQQLQLV
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHH
ARSPELLASASANPRVATRLEQLLLDLLIDGHPPAAPPARRADPAPGFVRRAQEFIGAQL
HCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AQPLQLADIAQAAGVPERTLRDGFLQFRGTSPMQYLRQRRLERARELLRTAAPERRIAEI
HCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ALDCGFAHFGRFAIAYRERFGELPSATLADRRDA
HHHHCHHHHHHHHHHHHHHHCCCCCCHHHCCCCC
>Mature Secondary Structure
MFRTPALCARQTIMPPTPFDPLALREHRLFESRDLDETRERISRVMQPHALLPDGSRHGP
CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCC
SHMDYVRLGGLGIGTIAFGDAMRVHLDAVDGYHLLMFCLTGSAQVRTMGRAFDVDAHTGV
CCCCEEEECCCEEEHHHHCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCEEECCCCCCE
LCAPGEPFDAHLSRDCEQFVLRIDAATLAAHAGDAAAALDPVIGIDDSALSAWMQQLQLV
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHH
ARSPELLASASANPRVATRLEQLLLDLLIDGHPPAAPPARRADPAPGFVRRAQEFIGAQL
HCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AQPLQLADIAQAAGVPERTLRDGFLQFRGTSPMQYLRQRRLERARELLRTAAPERRIAEI
HCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ALDCGFAHFGRFAIAYRERFGELPSATLADRRDA
HHHHCHHHHHHHHHHHHHHHCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8473862 [H]