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The map label for this gene is ymdC [H]

Identifier: 126446143

GI number: 126446143

Start: 203605

End: 205257

Strand: Reverse

Name: ymdC [H]

Synonym: BMA10247_A0239

Alternate gene names: 126446143

Gene position: 205257-203605 (Counterclockwise)

Preceding gene: 126447632

Following gene: 126447895

Centisome position: 8.72

GC content: 70.48

Gene sequence:

>1653_bases
GTGCCGGATCGCCCCGCCCTCCGCGGTCTCGCGCCGCGCCATCCACCGCGCATCGTCAAGGCCGCCGCGCGCGCGCTCGT
CCTGTGCGCGGCGCTCGCGCTCTCCGGCTGCGCGACGCATCCGCCCGCCACCACGCTCGAGCGCACCGTCTCCCACGCGC
TGCCGCCCGACGCATCGACGCCGCTCGCCGACGCGCTCGCCGTGCAGGCGCGCGCGCATCCGGGCGAATCGGGCTTCGTC
GTGCTGCCGCGCGGCGACGAGGCGCTGCAAATGCGGATCGCGGTGGCGCGCGCGGCGACGAAGACGCTCGACATCCAGTA
CTACATCGCCGCCGAGGACACGACGGGCAAGCTGCTGCTCGGCGCCGCGCTGTACGCGGCCGACCGCGGCGTGCGCGTGC
GCATGCTCGTCGACGCGCTGAACTTCAAGGACATCGACAAGCTGATGGCGGCGCTCGACGCGCACGCGAACCTCGAAGTC
CGCGTGTTCAATCCGTTCGGCGCCCCGCGCCTCGGCATGTTCGCGCGCACCGCGAACGTCTTCACGCGGATCGACAATTT
CACGCGCCGGATGCACAACAAGGCGATGATCTCGGACAACCAGATCGCGATCGTCGGCGGCCGCAATCTCGGCGACGAAT
ATTTCAACGCGAGCCCGACGCTGCAATTCCGCGACCTCGACGTGCTCGCGGCCGGCCCCGTCACCCGCGCCGTCTCGGCG
AGCTTCGACGCGTACTGGTCGAGCGCGCTCACGTATCCGCTGCCGGCGCTGAATCGCCGGCGCTACGACGCGAAGGATCT
GGACGCGGCGCGCGACGCGCTGCGCGCGCACTGGCGCGCGAACGCGACGCCGTACAACGCGAAGCCGCTGAACGCGACGC
CGCTCGCCGCGCAGATCGCGCGCAACGAGCTCGGCCTGGTATGGGCGAGCGCGGAGTTCACCGCCGATTCGCCCGAGAAG
ATCGCCGCGCCCGACGACAGCTACAAGAGCCCGCCGATGCAGCGGCTCTTCGCGCTCACGCGCGACGCGCAGCGCGAATT
CCTCGTGCTGTCGCCGTATTTCGTTCCGCACGATGCCGGCGTGAACGCGCTCGGCCGGCTGACCGCGCGCGGCGTGCGCG
TCGCGATCCTGACGAATTCGCTCGCGGCGACGGACGCGATCGCCGTGCAGGCGGGCTACGCGCCGTATCGCGTGCCGATG
CTCGAGCGCGGCGTCGAGCTGTACGAATACAAGCCGGACCCGGGCCGCTCGCGCATCGGCATGCTGGGTTCGCGCTCGCG
CGCGAGCCTGCACGCGAAGGCGTACGTGATCGACCGGAAGATTCTCGTAATCGGCTCGATGAACCTCGATCCGCGCTCCG
CGCATCTGAACACGGAGCTCGCGCTCGTGATCCACAGCCCGCGGCTCGCGAACGAAGTCGCGAATCTGTTCGACGAAGTG
ACGAAGCCGACGATCAGCTACCGCGTGACGCTCGCGCCCGACACGCCGGGCGCGGCGCAGACGACCGGCGCGGGCGCGCC
GGCATGGCCGCTCGTGTGGACCGAAATCGCCGACGGCCAGGTACGCACGTACAGCGTCGATCCGAACGCGGGCTTCTATC
GCAACCTGCTCACGGGGCTCTGCCTGCTGCTGCCGATCGACGATCAGCTTTGA

Upstream 100 bases:

>100_bases
GCGTCGGCGGCGCCACTTAGAATGCCTTCGCGCGGTGCACCGGCCTGCCGCGCCGTCGATTCGACGTTTCGTTCCGACCG
ATGCCCGAAGGAGTCCCAAC

Downstream 100 bases:

>100_bases
TCGCGACGCGCCACGGCGCAGCGCGACGCGGCGCATGCCCGTGCGCGCCGCCGGGCCCGCCGGCGCTCACAGCGCCGTGC
GGATACGCGCGGCGAGCGCC

Product: putative phospholipase D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 550; Mature: 549

Protein sequence:

>550_residues
MPDRPALRGLAPRHPPRIVKAAARALVLCAALALSGCATHPPATTLERTVSHALPPDASTPLADALAVQARAHPGESGFV
VLPRGDEALQMRIAVARAATKTLDIQYYIAAEDTTGKLLLGAALYAADRGVRVRMLVDALNFKDIDKLMAALDAHANLEV
RVFNPFGAPRLGMFARTANVFTRIDNFTRRMHNKAMISDNQIAIVGGRNLGDEYFNASPTLQFRDLDVLAAGPVTRAVSA
SFDAYWSSALTYPLPALNRRRYDAKDLDAARDALRAHWRANATPYNAKPLNATPLAAQIARNELGLVWASAEFTADSPEK
IAAPDDSYKSPPMQRLFALTRDAQREFLVLSPYFVPHDAGVNALGRLTARGVRVAILTNSLAATDAIAVQAGYAPYRVPM
LERGVELYEYKPDPGRSRIGMLGSRSRASLHAKAYVIDRKILVIGSMNLDPRSAHLNTELALVIHSPRLANEVANLFDEV
TKPTISYRVTLAPDTPGAAQTTGAGAPAWPLVWTEIADGQVRTYSVDPNAGFYRNLLTGLCLLLPIDDQL

Sequences:

>Translated_550_residues
MPDRPALRGLAPRHPPRIVKAAARALVLCAALALSGCATHPPATTLERTVSHALPPDASTPLADALAVQARAHPGESGFV
VLPRGDEALQMRIAVARAATKTLDIQYYIAAEDTTGKLLLGAALYAADRGVRVRMLVDALNFKDIDKLMAALDAHANLEV
RVFNPFGAPRLGMFARTANVFTRIDNFTRRMHNKAMISDNQIAIVGGRNLGDEYFNASPTLQFRDLDVLAAGPVTRAVSA
SFDAYWSSALTYPLPALNRRRYDAKDLDAARDALRAHWRANATPYNAKPLNATPLAAQIARNELGLVWASAEFTADSPEK
IAAPDDSYKSPPMQRLFALTRDAQREFLVLSPYFVPHDAGVNALGRLTARGVRVAILTNSLAATDAIAVQAGYAPYRVPM
LERGVELYEYKPDPGRSRIGMLGSRSRASLHAKAYVIDRKILVIGSMNLDPRSAHLNTELALVIHSPRLANEVANLFDEV
TKPTISYRVTLAPDTPGAAQTTGAGAPAWPLVWTEIADGQVRTYSVDPNAGFYRNLLTGLCLLLPIDDQL
>Mature_549_residues
PDRPALRGLAPRHPPRIVKAAARALVLCAALALSGCATHPPATTLERTVSHALPPDASTPLADALAVQARAHPGESGFVV
LPRGDEALQMRIAVARAATKTLDIQYYIAAEDTTGKLLLGAALYAADRGVRVRMLVDALNFKDIDKLMAALDAHANLEVR
VFNPFGAPRLGMFARTANVFTRIDNFTRRMHNKAMISDNQIAIVGGRNLGDEYFNASPTLQFRDLDVLAAGPVTRAVSAS
FDAYWSSALTYPLPALNRRRYDAKDLDAARDALRAHWRANATPYNAKPLNATPLAAQIARNELGLVWASAEFTADSPEKI
AAPDDSYKSPPMQRLFALTRDAQREFLVLSPYFVPHDAGVNALGRLTARGVRVAILTNSLAATDAIAVQAGYAPYRVPML
ERGVELYEYKPDPGRSRIGMLGSRSRASLHAKAYVIDRKILVIGSMNLDPRSAHLNTELALVIHSPRLANEVANLFDEVT
KPTISYRVTLAPDTPGAAQTTGAGAPAWPLVWTEIADGQVRTYSVDPNAGFYRNLLTGLCLLLPIDDQL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=422, Percent_Identity=40.2843601895735, Blast_Score=266, Evalue=3e-72,
Organism=Escherichia coli, GI1787007, Length=368, Percent_Identity=27.445652173913, Blast_Score=92, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59589; Mature: 59458

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDRPALRGLAPRHPPRIVKAAARALVLCAALALSGCATHPPATTLERTVSHALPPDAST
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCC
PLADALAVQARAHPGESGFVVLPRGDEALQMRIAVARAATKTLDIQYYIAAEDTTGKLLL
CHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCEEE
GAALYAADRGVRVRMLVDALNFKDIDKLMAALDAHANLEVRVFNPFGAPRLGMFARTANV
HHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
FTRIDNFTRRMHNKAMISDNQIAIVGGRNLGDEYFNASPTLQFRDLDVLAAGPVTRAVSA
HHHHHHHHHHHHCCEEECCCCEEEEECCCCCHHHCCCCCCEEEECCEEEECCCHHHHHHC
SFDAYWSSALTYPLPALNRRRYDAKDLDAARDALRAHWRANATPYNAKPLNATPLAAQIA
CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
RNELGLVWASAEFTADSPEKIAAPDDSYKSPPMQRLFALTRDAQREFLVLSPYFVPHDAG
HCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCEECCCCCC
VNALGRLTARGVRVAILTNSLAATDAIAVQAGYAPYRVPMLERGVELYEYKPDPGRSRIG
CHHHHHHHHCCEEEEEEECCCHHCCEEEEECCCCCEECCHHHCCCEEEEECCCCCCCHHC
MLGSRSRASLHAKAYVIDRKILVIGSMNLDPRSAHLNTELALVIHSPRLANEVANLFDEV
CCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHH
TKPTISYRVTLAPDTPGAAQTTGAGAPAWPLVWTEIADGQVRTYSVDPNAGFYRNLLTGL
CCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHH
CLLLPIDDQL
EEEEECCCCC
>Mature Secondary Structure 
PDRPALRGLAPRHPPRIVKAAARALVLCAALALSGCATHPPATTLERTVSHALPPDAST
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCC
PLADALAVQARAHPGESGFVVLPRGDEALQMRIAVARAATKTLDIQYYIAAEDTTGKLLL
CHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCEEE
GAALYAADRGVRVRMLVDALNFKDIDKLMAALDAHANLEVRVFNPFGAPRLGMFARTANV
HHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
FTRIDNFTRRMHNKAMISDNQIAIVGGRNLGDEYFNASPTLQFRDLDVLAAGPVTRAVSA
HHHHHHHHHHHHCCEEECCCCEEEEECCCCCHHHCCCCCCEEEECCEEEECCCHHHHHHC
SFDAYWSSALTYPLPALNRRRYDAKDLDAARDALRAHWRANATPYNAKPLNATPLAAQIA
CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
RNELGLVWASAEFTADSPEKIAAPDDSYKSPPMQRLFALTRDAQREFLVLSPYFVPHDAG
HCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCEECCCCCC
VNALGRLTARGVRVAILTNSLAATDAIAVQAGYAPYRVPMLERGVELYEYKPDPGRSRIG
CHHHHHHHHCCEEEEEEECCCHHCCEEEEECCCCCEECCHHHCCCEEEEECCCCCCCHHC
MLGSRSRASLHAKAYVIDRKILVIGSMNLDPRSAHLNTELALVIHSPRLANEVANLFDEV
CCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHH
TKPTISYRVTLAPDTPGAAQTTGAGAPAWPLVWTEIADGQVRTYSVDPNAGFYRNLLTGL
CCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHH
CLLLPIDDQL
EEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]