Click here to switch to the map view.

The map label for this gene is ydiK [C]

Identifier: 126446549

GI number: 126446549

Start: 1439944

End: 1441014

Strand: Reverse

Name: ydiK [C]

Synonym: BMA10247_A1484

Alternate gene names: 126446549

Gene position: 1441014-1439944 (Counterclockwise)

Preceding gene: 126447912

Following gene: 126446950

Centisome position: 61.25

GC content: 71.9

Gene sequence:

>1071_bases
ATGGTCCAGAACGCGTCTGTCCCGCCGGCGTCCGCCGGCCGCCCGAAGGCCCAATCGATCGCGCTCGGCGCGCTGTATGC
GGCGCTCGTCGCGCTTGCGTTGTGGGTGATCCGCGATTTCATGCCGGCGATCGCGTGGGCGTGCGTCGTGGCGATCGCGC
TGTGGCCCGCGCTGCGCCGGATCGACGCGCTGCCCGCGTTGCGCGGCCGCGCGACGCTCGTCGCCGCCGTGCTGACCTCG
GCGGTGGCGCTGCTCGTCGTCGTGCCGATCGCCGCGGGGCTCGTCGAGGCGGTCGACCAGAGCCACGAACTGCTCGGCTG
GCTGCATCGCGTCGAGCAGACGGGCATTCCCGAGCCTGACGTGCTGTCGCATCTGCCGTTCGGCTCGCAGCAGGCCAGCG
CGTGGTGGCTGGCGAATCTCGCGAAGCCGCTGCATCCGGCGACGGCGGTGAAGGGCGTCGACGGCGCAAGCGTCGTCACG
TTCGGCCGGCATTTCGGCTCGCGGCTCGCGCATGCGGCGGTGCTGTTCGGCTTCATGCTCGTCACGCTGTTCGTGATCTT
CCAGGCGGGCCCGCGCCTGTCGGGATCGCTGCTCACCGGTGTGCGGCGCGCGTTCGGCGACAGCGGCGCGGCGCTGCTGC
AGCGGATGGCGGCCGCCGTGTACGGAACGGTGACGGGGCTCGTCGTCGTCGGCTTCGGCGAGGGCGTGCTGCTCGGGCTC
GCGTACGCGTTCGCGGGCTTGCCGCATGCGGCGCTGCTCGGCCTCGTCACGGCGATCGCCGCGATGCTGCCGTTCTGCGC
GCCGCTCGTGTTCGGCGGCGCGGCGCTGTGGCTTTTTGTGCAGGGCGCGCTCGGTTGGGCGATCGGGCTCGCGGCGTTCG
GCTCGGTCGTCGTGTTCGCCGCCGAGCACTTCGTGCGGCCGGTGCTGATCGGCAACTCGGCGCGGCTGCCGTTCCTGCTC
GTGTTGTTCGGCATCCTCGGCGGCGCGGAGACGTTCGGGCTGCTTGGCTTGTTCGTCGGTCCCGCGCTGATGACGGTGCT
CACCGTGCTGTGGGCGGAATGGGTCGATTGA

Upstream 100 bases:

>100_bases
CGAATGTCCTCGAGCGTCCTTGGGCGCCCTCGCGCGTCCTTTAAGATGGCGGTGTCCGCGGCGGCGTGCGCCGCTTTTTC
ACTTTTCGCGAAGAGTCCTC

Downstream 100 bases:

>100_bases
CGGCGCACGCCGAACGAACGGGGCGTTGTTTTTCTGACTGTTTTTAGAAAATTCAACAAAAAGACGGCGAAACGTCGATT
AGCATGCAGTTTTCCACTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MVQNASVPPASAGRPKAQSIALGALYAALVALALWVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAAVLTS
AVALLVVVPIAAGLVEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWLANLAKPLHPATAVKGVDGASVVT
FGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGAALLQRMAAAVYGTVTGLVVVGFGEGVLLGL
AYAFAGLPHAALLGLVTAIAAMLPFCAPLVFGGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLL
VLFGILGGAETFGLLGLFVGPALMTVLTVLWAEWVD

Sequences:

>Translated_356_residues
MVQNASVPPASAGRPKAQSIALGALYAALVALALWVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAAVLTS
AVALLVVVPIAAGLVEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWLANLAKPLHPATAVKGVDGASVVT
FGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGAALLQRMAAAVYGTVTGLVVVGFGEGVLLGL
AYAFAGLPHAALLGLVTAIAAMLPFCAPLVFGGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLL
VLFGILGGAETFGLLGLFVGPALMTVLTVLWAEWVD
>Mature_356_residues
MVQNASVPPASAGRPKAQSIALGALYAALVALALWVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAAVLTS
AVALLVVVPIAAGLVEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWLANLAKPLHPATAVKGVDGASVVT
FGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGAALLQRMAAAVYGTVTGLVVVGFGEGVLLGL
AYAFAGLPHAALLGLVTAIAAMLPFCAPLVFGGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLL
VLFGILGGAETFGLLGLFVGPALMTVLTVLWAEWVD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=350, Percent_Identity=30, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 36866; Mature: 36866

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQNASVPPASAGRPKAQSIALGALYAALVALALWVIRDFMPAIAWACVVAIALWPALRR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDALPALRGRATLVAAVLTSAVALLVVVPIAAGLVEAVDQSHELLGWLHRVEQTGIPEPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
VLSHLPFGSQQASAWWLANLAKPLHPATAVKGVDGASVVTFGRHFGSRLAHAAVLFGFML
HHHCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VTLFVIFQAGPRLSGSLLTGVRRAFGDSGAALLQRMAAAVYGTVTGLVVVGFGEGVLLGL
HHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHH
AYAFAGLPHAALLGLVTAIAAMLPFCAPLVFGGAALWLFVQGALGWAIGLAAFGSVVVFA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEHFVRPVLIGNSARLPFLLVLFGILGGAETFGLLGLFVGPALMTVLTVLWAEWVD
HHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVQNASVPPASAGRPKAQSIALGALYAALVALALWVIRDFMPAIAWACVVAIALWPALRR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDALPALRGRATLVAAVLTSAVALLVVVPIAAGLVEAVDQSHELLGWLHRVEQTGIPEPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
VLSHLPFGSQQASAWWLANLAKPLHPATAVKGVDGASVVTFGRHFGSRLAHAAVLFGFML
HHHCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VTLFVIFQAGPRLSGSLLTGVRRAFGDSGAALLQRMAAAVYGTVTGLVVVGFGEGVLLGL
HHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHH
AYAFAGLPHAALLGLVTAIAAMLPFCAPLVFGGAALWLFVQGALGWAIGLAAFGSVVVFA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEHFVRPVLIGNSARLPFLLVLFGILGGAETFGLLGLFVGPALMTVLTVLWAEWVD
HHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]