Click here to switch to the map view.

The map label for this gene is cirA [C]

Identifier: 126446518

GI number: 126446518

Start: 249627

End: 251672

Strand: Direct

Name: cirA [C]

Synonym: BMA10247_A0287

Alternate gene names: 126446518

Gene position: 249627-251672 (Clockwise)

Preceding gene: 126446587

Following gene: 126446872

Centisome position: 10.61

GC content: 71.51

Gene sequence:

>2046_bases
TTGTCGCTGCTGCTCGCCGCGAGCCTCGCGCATGGCGAGACGGGCGCGCCGCCCGCCGAGCGCCGATCGGACGCGCCGCC
CGCGACGGCGCTCGCGCCGATCTTCGTGACCGCGAACCCGCTCGGCGCGTCGGCGCTGAGCTCGCCCACCGCGTCGCTGT
CCGGCGACGCGCTGACGCTGCGCCGCACCGATTCGCTCGGCGACACGCTGAACGGCCTGCCCGGCGTGTCCACGACGACC
TATGGCCCGCTCGTCGGCCGTCCGATCATCCGCGGGATGGACGGCGATCGCATCCGCCTCCTGCAGAACGGCGTCGCCGC
GTACGACGCGTCGTCGCTGTCCTACGATCACGCGGTGCCGCAGGATCCGCTGAGCGTCGAGCGCATCGAGATCGTGCGCG
GGCCGGCGGCGTTGCTGTACGGCGGCAACGCGGTCGGCGGCGTCGTCAACACGATCGACAACCGGATTCCGCGCGAAGCG
ATCACGGGCGTCTCGGGCGCGCTCGACGCGAGCTACGGCGGCGCGAACAACGCGCGTGCGGGCGCGGCGCTCGTCGAAGG
CGGCAACGGCCGCTTCGCGTTTCATCTCGACGCGTTCGGCCGCGAGACCGACGCGCTGCGGATTCCGGGCCATGCGCATT
CGGCGCGCCAGCGCGCGCTCGACGGCGAGGACGCCAGCGAGCCGTACGGCAGGCTGCCGAACAGCGACGGCCGCCGTTAC
GGCGGCGCGGCGGGCGGCTCGTACACGTGGGCGGACGGCTACGTCGGCGCATCGTACAGCGGCTACGAATCGAACTACGG
CTCCGTCGCCGAAACCGACGCGCGGCTTCAGATGCGGCAGGAGCGCGTCGCGCTCGCGTCGGAGGTGCGCAATCTGCGCG
GGCCGTTCTCGCAGCTGAAATTCGACTTCGGCTACACGAATTACCAGCATAAGGAAATCGAGGACGGCGTGACGGGCACG
ACGTTTCGCAATCACGGCTACGAGGCGCGCGTCGAGGCGCGGCACCGCAAGCTCGGCCCGTTCGAAGGCGCGCTCGGCGT
GCAGGTCGGACAGAACACGTTCTCCGCGCTCGGCGGCGAGGCGCTCGCGCCTACCACGCGCACGACGAGCGTCGCGCTGT
TCGGCCTCGAGCAGTGGCAGGCGACCGACGCGCTGAAGCTGTCCGCCGGCGCGCGCATCGAGCACGTGCGGCTCGATCCG
AGCGCGAACGGCGACGACAAGTTCGGCTTCGCGCGCTCGCGCGATTTCAATGCGGGCAGCGTGTCGGCGGGCGCGCTGTA
CCAGCTCGCGCCCGCGTGGTCGCTCGCGGGCAACGTGTCGTACACGGAGCGCGCGCCGACCTTCTACGAGCTGTACGCGA
ACGGCCCGCACGGCGCGACGGGACAGTACCTGATCGGCCGGCCCGATGCGCAGAAGGAGAAGGCGGTGTCGACCGATCTC
GCGCTGCGCTATGCGAGCGGTCCGAACCGTGGCAGCATCGGCGTGTTCTACAGCCGCCTGCGGAACTACCTCGCCGAATA
CGACACCGGACGGCTCGTCGACGACGACGGCGTGCCCGTGGCCCCGGGCGCCGACGACGCGCTGCGCGAGGCCGTCTATC
GCGGCGTGCGCGCGGAGTTCTACGGCGTCGAGCTCGAAGGCAGGTGGCGCGCGTTCGAACGGCGCGGGCATCGCGTCGAT
CTCGAGCTGAGCGCCGACTACACGCACGCGCGCAACGCGGACACGGGCGAGCCGCTGCCGCGGATCGCGCCGCTGCGCGC
GACGCTCGCGGCCGATTACGGCTACGGCCCGTTCGGTGCGCGCGCGCAGCTCACGCATGCATGGGCGCAGCATCGCGTGC
CCGAGCACGATCTCGCGACCGACGGCTACACGTCGCTCGGCGTCGTGCTCACCTACAAGTTGCGCGTCGGCGCGACGAAC
TGGCTCGCCTATCTGCGCGGCGACAACCTGACGAACCAGGACATCCGCTACGCGAGCTCGGTGGTGCGCAACATCGCGCC
GCAGGGCGGGCGCAGCGTGAGCATCGGGATGCGCACGACATTCTGA

Upstream 100 bases:

>100_bases
TTCGGCCCGTGATTCCGTCCACCCCGACCACACCACACCGATTACCGCAATGGATGACCACCGACGTATCGCGCCGCCTT
TCGCTCGCAGGCTGCATCCC

Downstream 100 bases:

>100_bases
GCGCGCGCCGGGCGCCGGGCGTCGGGGGAGGGGCCCGCCGCCCGGCTGCGCCCCCTTCTGTTAGGCGGCGTTCGTTTGTA
AGATAGCGGTCGCCGCGCGC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 681; Mature: 680

Protein sequence:

>681_residues
MSLLLAASLAHGETGAPPAERRSDAPPATALAPIFVTANPLGASALSSPTASLSGDALTLRRTDSLGDTLNGLPGVSTTT
YGPLVGRPIIRGMDGDRIRLLQNGVAAYDASSLSYDHAVPQDPLSVERIEIVRGPAALLYGGNAVGGVVNTIDNRIPREA
ITGVSGALDASYGGANNARAGAALVEGGNGRFAFHLDAFGRETDALRIPGHAHSARQRALDGEDASEPYGRLPNSDGRRY
GGAAGGSYTWADGYVGASYSGYESNYGSVAETDARLQMRQERVALASEVRNLRGPFSQLKFDFGYTNYQHKEIEDGVTGT
TFRNHGYEARVEARHRKLGPFEGALGVQVGQNTFSALGGEALAPTTRTTSVALFGLEQWQATDALKLSAGARIEHVRLDP
SANGDDKFGFARSRDFNAGSVSAGALYQLAPAWSLAGNVSYTERAPTFYELYANGPHGATGQYLIGRPDAQKEKAVSTDL
ALRYASGPNRGSIGVFYSRLRNYLAEYDTGRLVDDDGVPVAPGADDALREAVYRGVRAEFYGVELEGRWRAFERRGHRVD
LELSADYTHARNADTGEPLPRIAPLRATLAADYGYGPFGARAQLTHAWAQHRVPEHDLATDGYTSLGVVLTYKLRVGATN
WLAYLRGDNLTNQDIRYASSVVRNIAPQGGRSVSIGMRTTF

Sequences:

>Translated_681_residues
MSLLLAASLAHGETGAPPAERRSDAPPATALAPIFVTANPLGASALSSPTASLSGDALTLRRTDSLGDTLNGLPGVSTTT
YGPLVGRPIIRGMDGDRIRLLQNGVAAYDASSLSYDHAVPQDPLSVERIEIVRGPAALLYGGNAVGGVVNTIDNRIPREA
ITGVSGALDASYGGANNARAGAALVEGGNGRFAFHLDAFGRETDALRIPGHAHSARQRALDGEDASEPYGRLPNSDGRRY
GGAAGGSYTWADGYVGASYSGYESNYGSVAETDARLQMRQERVALASEVRNLRGPFSQLKFDFGYTNYQHKEIEDGVTGT
TFRNHGYEARVEARHRKLGPFEGALGVQVGQNTFSALGGEALAPTTRTTSVALFGLEQWQATDALKLSAGARIEHVRLDP
SANGDDKFGFARSRDFNAGSVSAGALYQLAPAWSLAGNVSYTERAPTFYELYANGPHGATGQYLIGRPDAQKEKAVSTDL
ALRYASGPNRGSIGVFYSRLRNYLAEYDTGRLVDDDGVPVAPGADDALREAVYRGVRAEFYGVELEGRWRAFERRGHRVD
LELSADYTHARNADTGEPLPRIAPLRATLAADYGYGPFGARAQLTHAWAQHRVPEHDLATDGYTSLGVVLTYKLRVGATN
WLAYLRGDNLTNQDIRYASSVVRNIAPQGGRSVSIGMRTTF
>Mature_680_residues
SLLLAASLAHGETGAPPAERRSDAPPATALAPIFVTANPLGASALSSPTASLSGDALTLRRTDSLGDTLNGLPGVSTTTY
GPLVGRPIIRGMDGDRIRLLQNGVAAYDASSLSYDHAVPQDPLSVERIEIVRGPAALLYGGNAVGGVVNTIDNRIPREAI
TGVSGALDASYGGANNARAGAALVEGGNGRFAFHLDAFGRETDALRIPGHAHSARQRALDGEDASEPYGRLPNSDGRRYG
GAAGGSYTWADGYVGASYSGYESNYGSVAETDARLQMRQERVALASEVRNLRGPFSQLKFDFGYTNYQHKEIEDGVTGTT
FRNHGYEARVEARHRKLGPFEGALGVQVGQNTFSALGGEALAPTTRTTSVALFGLEQWQATDALKLSAGARIEHVRLDPS
ANGDDKFGFARSRDFNAGSVSAGALYQLAPAWSLAGNVSYTERAPTFYELYANGPHGATGQYLIGRPDAQKEKAVSTDLA
LRYASGPNRGSIGVFYSRLRNYLAEYDTGRLVDDDGVPVAPGADDALREAVYRGVRAEFYGVELEGRWRAFERRGHRVDL
ELSADYTHARNADTGEPLPRIAPLRATLAADYGYGPFGARAQLTHAWAQHRVPEHDLATDGYTSLGVVLTYKLRVGATNW
LAYLRGDNLTNQDIRYASSVVRNIAPQGGRSVSIGMRTTF

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 72693; Mature: 72562

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLLAASLAHGETGAPPAERRSDAPPATALAPIFVTANPLGASALSSPTASLSGDALTL
CCEEEEEHHCCCCCCCCCHHHCCCCCCCHHEEEEEEECCCCCCHHHCCCCCCCCCCEEEE
RRTDSLGDTLNGLPGVSTTTYGPLVGRPIIRGMDGDRIRLLQNGVAAYDASSLSYDHAVP
EECCCCCCHHCCCCCCCCCCCCCHHCCHHHCCCCCCEEEEECCCCHHCCCCCCCCCCCCC
QDPLSVERIEIVRGPAALLYGGNAVGGVVNTIDNRIPREAITGVSGALDASYGGANNARA
CCCCCCEEEEEEECCEEEEECCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCC
GAALVEGGNGRFAFHLDAFGRETDALRIPGHAHSARQRALDGEDASEPYGRLPNSDGRRY
CEEEEECCCCEEEEEEECCCCCCCEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
GGAAGGSYTWADGYVGASYSGYESNYGSVAETDARLQMRQERVALASEVRNLRGPFSQLK
CCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEE
FDFGYTNYQHKEIEDGVTGTTFRNHGYEARVEARHRKLGPFEGALGVQVGQNTFSALGGE
EECCCCCCCCHHHHCCCCCCEECCCCCEEEHHHHHHCCCCCCCCCEEEECCHHHHHCCCC
ALAPTTRTTSVALFGLEQWQATDALKLSAGARIEHVRLDPSANGDDKFGFARSRDFNAGS
CCCCCCCCCEEEEEECHHHCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
VSAGALYQLAPAWSLAGNVSYTERAPTFYELYANGPHGATGQYLIGRPDAQKEKAVSTDL
CCCCHHEEECCCHHHCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHH
ALRYASGPNRGSIGVFYSRLRNYLAEYDTGRLVDDDGVPVAPGADDALREAVYRGVRAEF
EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCCEE
YGVELEGRWRAFERRGHRVDLELSADYTHARNADTGEPLPRIAPLRATLAADYGYGPFGA
EEEEECCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCC
RAQLTHAWAQHRVPEHDLATDGYTSLGVVLTYKLRVGATNWLAYLRGDNLTNQDIRYASS
CHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEECCCCCCHHHHHHHH
VVRNIAPQGGRSVSIGMRTTF
HHHHCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
SLLLAASLAHGETGAPPAERRSDAPPATALAPIFVTANPLGASALSSPTASLSGDALTL
CEEEEEHHCCCCCCCCCHHHCCCCCCCHHEEEEEEECCCCCCHHHCCCCCCCCCCEEEE
RRTDSLGDTLNGLPGVSTTTYGPLVGRPIIRGMDGDRIRLLQNGVAAYDASSLSYDHAVP
EECCCCCCHHCCCCCCCCCCCCCHHCCHHHCCCCCCEEEEECCCCHHCCCCCCCCCCCCC
QDPLSVERIEIVRGPAALLYGGNAVGGVVNTIDNRIPREAITGVSGALDASYGGANNARA
CCCCCCEEEEEEECCEEEEECCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCC
GAALVEGGNGRFAFHLDAFGRETDALRIPGHAHSARQRALDGEDASEPYGRLPNSDGRRY
CEEEEECCCCEEEEEEECCCCCCCEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
GGAAGGSYTWADGYVGASYSGYESNYGSVAETDARLQMRQERVALASEVRNLRGPFSQLK
CCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEE
FDFGYTNYQHKEIEDGVTGTTFRNHGYEARVEARHRKLGPFEGALGVQVGQNTFSALGGE
EECCCCCCCCHHHHCCCCCCEECCCCCEEEHHHHHHCCCCCCCCCEEEECCHHHHHCCCC
ALAPTTRTTSVALFGLEQWQATDALKLSAGARIEHVRLDPSANGDDKFGFARSRDFNAGS
CCCCCCCCCEEEEEECHHHCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
VSAGALYQLAPAWSLAGNVSYTERAPTFYELYANGPHGATGQYLIGRPDAQKEKAVSTDL
CCCCHHEEECCCHHHCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHH
ALRYASGPNRGSIGVFYSRLRNYLAEYDTGRLVDDDGVPVAPGADDALREAVYRGVRAEF
EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCCEE
YGVELEGRWRAFERRGHRVDLELSADYTHARNADTGEPLPRIAPLRATLAADYGYGPFGA
EEEEECCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCC
RAQLTHAWAQHRVPEHDLATDGYTSLGVVLTYKLRVGATNWLAYLRGDNLTNQDIRYASS
CHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEECCCCCCHHHHHHHH
VVRNIAPQGGRSVSIGMRTTF
HHHHCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]