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The map label for this gene is ygiD [H]

Identifier: 126455222

GI number: 126455222

Start: 3520890

End: 3521678

Strand: Direct

Name: ygiD [H]

Synonym: BURPS1106A_3618

Alternate gene names: 126455222

Gene position: 3520890-3521678 (Clockwise)

Preceding gene: 126452074

Following gene: 126454221

Centisome position: 88.28

GC content: 70.72

Gene sequence:

>789_bases
ATGAACCGCCTACCGTCCCTCTATCTGTCGCATGGCGCGCCGACGCTGCCGATCGATCCGACGCTGCCGTCCGGCGCGTT
CACCGAGCTCGGCGCCGAGCTGCCGCGGCCGCGCGCGGTGCTGATGCTGTCCGCGCACTGGCTCACGCAGCAGCCCGTCG
TCAGCACCGCCGAGCGGCCGGACACGATTCACGACTTCTACGGCTTTCCGCGCGCGCTCTATGAAATTCGCTATCCGGCG
CCCGGCGCGCCCGACGTCGCGGCGCACGCGGCCGCGCTACTGCGCAGCGCCGGCATCGAGACCGCGGCCACGCCGCACGG
CCTCGACCATGGCGCATGGGTGCCGATGCTGCTGATGTTCCCGCACGCCGACGTGCCGGTCGCGCAACTGTCGATCCAGC
CGCGCGCCGATGCCGCGCACCACTTCCGCGTCGGGCGCGCGCTGCGGCCGCTGCGCGACGAAGGTGTGATGGTGATCGGC
TCGGGCCAGATCACGCACAACCTGCGCGCGGCGGATTTCTCGGCCGCGCCCGACGATGTGGATCCGCGCGTCGCCGAATT
CACCGGCTGGTTCGAGGAAGCGCTCGCCGCGCGCGACGTCGACGCGCTCGTCGACTATCGCCGCCGGGCGCCGCACGCGG
CGCTGATGCATCCGACCGACGAGCATCTGCTGCCCGTGTTCGCGGCCCTCGGCGCAGCGGACGACGACTATCGGTTGAGA
ATTCAGTCGCTCGGCACGTACCAGCGCATGCTCGCGATGACGAATTACGTGTTCGATTCGGCGGCCTGA

Upstream 100 bases:

>100_bases
TAACACCGACGATACAATAAAATCCATTTTTCGCATTTATCAATGATGAGTGCGAGCCTATAGTCGTAGGCAATATCACT
TCGCAGAAGCCCCGATCATC

Downstream 100 bases:

>100_bases
CGCGACGCAGGCGTCTCGGCAATCCGCAGCGGCTTTGGATCGCCGGGGTTCTCAGGGCTTGAGGGCTTGGCGTGGGCTTC
GAGGCTAGGGCTAGGGCTCG

Product: class III extradiol-type catecholic dioxygenase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MNRLPSLYLSHGAPTLPIDPTLPSGAFTELGAELPRPRAVLMLSAHWLTQQPVVSTAERPDTIHDFYGFPRALYEIRYPA
PGAPDVAAHAAALLRSAGIETAATPHGLDHGAWVPMLLMFPHADVPVAQLSIQPRADAAHHFRVGRALRPLRDEGVMVIG
SGQITHNLRAADFSAAPDDVDPRVAEFTGWFEEALAARDVDALVDYRRRAPHAALMHPTDEHLLPVFAALGAADDDYRLR
IQSLGTYQRMLAMTNYVFDSAA

Sequences:

>Translated_262_residues
MNRLPSLYLSHGAPTLPIDPTLPSGAFTELGAELPRPRAVLMLSAHWLTQQPVVSTAERPDTIHDFYGFPRALYEIRYPA
PGAPDVAAHAAALLRSAGIETAATPHGLDHGAWVPMLLMFPHADVPVAQLSIQPRADAAHHFRVGRALRPLRDEGVMVIG
SGQITHNLRAADFSAAPDDVDPRVAEFTGWFEEALAARDVDALVDYRRRAPHAALMHPTDEHLLPVFAALGAADDDYRLR
IQSLGTYQRMLAMTNYVFDSAA
>Mature_262_residues
MNRLPSLYLSHGAPTLPIDPTLPSGAFTELGAELPRPRAVLMLSAHWLTQQPVVSTAERPDTIHDFYGFPRALYEIRYPA
PGAPDVAAHAAALLRSAGIETAATPHGLDHGAWVPMLLMFPHADVPVAQLSIQPRADAAHHFRVGRALRPLRDEGVMVIG
SGQITHNLRAADFSAAPDDVDPRVAEFTGWFEEALAARDVDALVDYRRRAPHAALMHPTDEHLLPVFAALGAADDDYRLR
IQSLGTYQRMLAMTNYVFDSAA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=255, Percent_Identity=38.0392156862745, Blast_Score=174, Evalue=4e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28587; Mature: 28587

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLPSLYLSHGAPTLPIDPTLPSGAFTELGAELPRPRAVLMLSAHWLTQQPVVSTAERP
CCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECHHHCCCCHHHHCCCC
DTIHDFYGFPRALYEIRYPAPGAPDVAAHAAALLRSAGIETAATPHGLDHGAWVPMLLMF
CHHHHHHCCHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHC
PHADVPVAQLSIQPRADAAHHFRVGRALRPLRDEGVMVIGSGQITHNLRAADFSAAPDDV
CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCEECCCCCCCCCCCCCCC
DPRVAEFTGWFEEALAARDVDALVDYRRRAPHAALMHPTDEHLLPVFAALGAADDDYRLR
CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCCCCEEE
IQSLGTYQRMLAMTNYVFDSAA
EHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRLPSLYLSHGAPTLPIDPTLPSGAFTELGAELPRPRAVLMLSAHWLTQQPVVSTAERP
CCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECHHHCCCCHHHHCCCC
DTIHDFYGFPRALYEIRYPAPGAPDVAAHAAALLRSAGIETAATPHGLDHGAWVPMLLMF
CHHHHHHCCHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHC
PHADVPVAQLSIQPRADAAHHFRVGRALRPLRDEGVMVIGSGQITHNLRAADFSAAPDDV
CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCEECCCCCCCCCCCCCCC
DPRVAEFTGWFEEALAARDVDALVDYRRRAPHAALMHPTDEHLLPVFAALGAADDDYRLR
CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCCCCEEE
IQSLGTYQRMLAMTNYVFDSAA
EHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]