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The map label for this gene is ycjO [C]

Identifier: 126455091

GI number: 126455091

Start: 860328

End: 861284

Strand: Direct

Name: ycjO [C]

Synonym: BURPS1106A_0877

Alternate gene names: 126455091

Gene position: 860328-861284 (Clockwise)

Preceding gene: 126453944

Following gene: 126454655

Centisome position: 21.57

GC content: 66.25

Gene sequence:

>957_bases
GTGGTCCCGATCATGCGTCACTTACGTCTTCCTCTCGCTCACTCGGCGTCGCTCGTCGGCGCGGGGCCTGCCGCCGACGA
GCGCGCGCGCGGCAAGCCGGCGCGCTGGCTCGCGGCGCCGTCCGTCGCCGTGCTGCTGCTGTGGATGGCGATTCCGCTCG
CGATGACGATCTGGTTCTCGCTCACGCGCTACAACCTGCTGAATCCGGACGTCAAGGGTTTCGCCGGCCTGGAGAACTAC
CGTTTTCTCGCGACCGATCCGTCGTTCCTGCCGGCGATCTGGCACACGCTCGCGCTGATCGGCTCGGTGCTCGCGATCAC
GGTGGCGGGCGGCGTGTTGATGGCCGTGCTGTTCGACCGCAAGTTCTACGGGCAGGGCATCGCGCGGCTCATCGCGATCG
CGCCGTTCTTCGTGATGCCGACGGTGTCGGCGCTCATCTGGAAGAACATGATCCTGCACCCGGTGTACGGGCTCGTCGCG
CGCGCGATGCGCGCGCTCGGCATGCAGCCGATCGACTGGTTCGCGCAGTATCCGCTCACGTCGATCGTGATCATCGTCGC
GTGGCAGTGGCTGCCGTTCGCGTTCCTGATCCTCTTCACCGCGATCCAGTCGCTCGACCAGGAGCAGAAGGAGGCCGCGC
GGATCGACGGCGCGGGCGCGTTCGCGATGTTCTTCTACATCACGCTGCCGCACCTGCGGCGCGCGATCGCGGTCGTCGTG
ATGATGGAGACGATCTTCCTGCTGTCGATCTTCGCGGAAATCTATACGACCACGGGCGGCGGCCCGGGCGACGCGACGAC
GAACCTGTCGTACCTGATCTACGCGCTCGGGCTGCAGCAGTTCGACGTCGGGCTCGCGTCGGCGGGCGGCATTCTCGCCG
TCGTGCTCGCGAACGTCGTGTCGTTCTTCCTCGTGAGAATGCTCGCGCGGAATCTGAAAGGGGAGTACGAAGCATGA

Upstream 100 bases:

>100_bases
AGTGAAGCGCCGTGCGCGCCGCGCCCGCATCGGGCGCGGCGCGCACGGCATCGCAGCAGCGCGGGCGCGAAGCGGTGCGC
GCGCCCGCGCATCGAAAGAG

Downstream 100 bases:

>100_bases
GCGATCTGACCGTATCGACCCCGCGCGGCGCATTCGGGGCGCCGCGCGCCGCGCTCGGCGCGCTCAAGCGCGCGCTGCCC
GGCCTGCTTGCGTGGCTCGT

Product: putative sorbitol/mannitol ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MVPIMRHLRLPLAHSASLVGAGPAADERARGKPARWLAAPSVAVLLLWMAIPLAMTIWFSLTRYNLLNPDVKGFAGLENY
RFLATDPSFLPAIWHTLALIGSVLAITVAGGVLMAVLFDRKFYGQGIARLIAIAPFFVMPTVSALIWKNMILHPVYGLVA
RAMRALGMQPIDWFAQYPLTSIVIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGAFAMFFYITLPHLRRAIAVVV
MMETIFLLSIFAEIYTTTGGGPGDATTNLSYLIYALGLQQFDVGLASAGGILAVVLANVVSFFLVRMLARNLKGEYEA

Sequences:

>Translated_318_residues
MVPIMRHLRLPLAHSASLVGAGPAADERARGKPARWLAAPSVAVLLLWMAIPLAMTIWFSLTRYNLLNPDVKGFAGLENY
RFLATDPSFLPAIWHTLALIGSVLAITVAGGVLMAVLFDRKFYGQGIARLIAIAPFFVMPTVSALIWKNMILHPVYGLVA
RAMRALGMQPIDWFAQYPLTSIVIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGAFAMFFYITLPHLRRAIAVVV
MMETIFLLSIFAEIYTTTGGGPGDATTNLSYLIYALGLQQFDVGLASAGGILAVVLANVVSFFLVRMLARNLKGEYEA
>Mature_318_residues
MVPIMRHLRLPLAHSASLVGAGPAADERARGKPARWLAAPSVAVLLLWMAIPLAMTIWFSLTRYNLLNPDVKGFAGLENY
RFLATDPSFLPAIWHTLALIGSVLAITVAGGVLMAVLFDRKFYGQGIARLIAIAPFFVMPTVSALIWKNMILHPVYGLVA
RAMRALGMQPIDWFAQYPLTSIVIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGAFAMFFYITLPHLRRAIAVVV
MMETIFLLSIFAEIYTTTGGGPGDATTNLSYLIYALGLQQFDVGLASAGGILAVVLANVVSFFLVRMLARNLKGEYEA

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=263, Percent_Identity=30.7984790874525, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1789861, Length=291, Percent_Identity=25.7731958762887, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1790465, Length=224, Percent_Identity=28.125, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34832; Mature: 34832

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPIMRHLRLPLAHSASLVGAGPAADERARGKPARWLAAPSVAVLLLWMAIPLAMTIWFS
CCCHHHHHCCCHHHCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LTRYNLLNPDVKGFAGLENYRFLATDPSFLPAIWHTLALIGSVLAITVAGGVLMAVLFDR
HHHHHCCCCCCHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFYGQGIARLIAIAPFFVMPTVSALIWKNMILHPVYGLVARAMRALGMQPIDWFAQYPLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHH
SIVIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGAFAMFFYITLPHLRRAIAVVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
MMETIFLLSIFAEIYTTTGGGPGDATTNLSYLIYALGLQQFDVGLASAGGILAVVLANVV
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHH
SFFLVRMLARNLKGEYEA
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVPIMRHLRLPLAHSASLVGAGPAADERARGKPARWLAAPSVAVLLLWMAIPLAMTIWFS
CCCHHHHHCCCHHHCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LTRYNLLNPDVKGFAGLENYRFLATDPSFLPAIWHTLALIGSVLAITVAGGVLMAVLFDR
HHHHHCCCCCCHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFYGQGIARLIAIAPFFVMPTVSALIWKNMILHPVYGLVARAMRALGMQPIDWFAQYPLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHH
SIVIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGAFAMFFYITLPHLRRAIAVVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
MMETIFLLSIFAEIYTTTGGGPGDATTNLSYLIYALGLQQFDVGLASAGGILAVVLANVV
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHH
SFFLVRMLARNLKGEYEA
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]