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The map label for this gene is ybcM [C]

Identifier: 126454909

GI number: 126454909

Start: 1458709

End: 1459731

Strand: Direct

Name: ybcM [C]

Synonym: BURPS1106A_1503

Alternate gene names: 126454909

Gene position: 1458709-1459731 (Clockwise)

Preceding gene: 126451782

Following gene: 126453869

Centisome position: 36.57

GC content: 70.28

Gene sequence:

>1023_bases
TTGACCGCCAAGCTCGCCCACTGGGATTTCGTCCGGCCTGTCGCGACGACGCGCGTGCTCGTCGACGTGGGCGTCGAGCA
GGGGCTCGCCGTCGGACAGTGCCTGGGCGGCAGCGGTGTCTGCGCCGATCTGCTCGACAAGCCGGACGCCACCGTCGCCG
CCGTGCAGGAACTGCGCATCGTTCGCAATCTGATGCGGCTGCTGGGGCCGGACTTTCCGCTCGGCATCGAGATCGGCCGG
CGCTATCACGCGACCGCCTATGGCGTCTGGGGTTTCGCGCTGATGAGCAGCGCGACGTTCGGCGACGCCGTGTCGGTCGG
CTTGCGCTATCTTCAATTGACGTCGACCTTCTGCGAGATCCGGCCGACGCTGCGCGGCGACGACGCGACGCTCGTGATCG
ACGACCGCGACCTGCCCGGCGACGTGCGCGACGTGCTGGTCGAAATCACGGTGGCCGCGTTGATCACGCTGCAATTCGAT
CTCGACGCGGCGAACTTGCCGGTCAAGCGTCTGGCGCTCAAGATGAAGCCGCCGTCGTACGCCGGCCGCTTCCGGACGCT
GTTCGACGCGACGCCCGAATTCGGCGCGGCGCACAATGCGCTGACGGTGGACGCGCGCTGTCTCGACCTGAAGCTGCCGC
AGCGCAACGCGCTGACGCGGCGGCGGTGCGAGGACGAGTGCCGCCGCGTGCTCGAGCGCCATCGTCGCTGCGAAGGCTGG
GCGGGGCGCGTGCGCCGGCAGTTGGCCGGCGATCCGGCGCGCGGCCCGACGATGGACGTGCTCGCGGCCGAACTGGGCGT
GAGCCCGCGCACATTGCGGCGGCGGCTCGCGAACGAGGGGACGGATTACGAGACGGTCGTCGACGAGCTTCGCCAAGCGC
TGGCCGAGGCGCTGCTCGCGACGACGACGTTGACGCTCGCCGAGGTGTCGGAGCGGCTCGGCTATTCGGAGCCATCCGCG
TTCGCGCGCGCGTTCAGGCGCTGGAAGGGGATGTCGCCGAGCGAATACCGGCGCGCGGCGTGA

Upstream 100 bases:

>100_bases
CCGGGGACGGATGCCCATAATCGGGTGTGCGGGAAAGATCGCATTGAGCGTTACATTGAGCAATGGCATATTGGGCGCAT
TCCGAACATTTGAGGCCATC

Downstream 100 bases:

>100_bases
GTGGAGAGGGCGCCGCGTAGGCGGAAAGGGCGCCGCGCGCCGGCCGTCCGCGTCCGGCGCATGAGCGGGGCGCGCCCGCC
GTGCGTCGCGCACCCCGGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MTAKLAHWDFVRPVATTRVLVDVGVEQGLAVGQCLGGSGVCADLLDKPDATVAAVQELRIVRNLMRLLGPDFPLGIEIGR
RYHATAYGVWGFALMSSATFGDAVSVGLRYLQLTSTFCEIRPTLRGDDATLVIDDRDLPGDVRDVLVEITVAALITLQFD
LDAANLPVKRLALKMKPPSYAGRFRTLFDATPEFGAAHNALTVDARCLDLKLPQRNALTRRRCEDECRRVLERHRRCEGW
AGRVRRQLAGDPARGPTMDVLAAELGVSPRTLRRRLANEGTDYETVVDELRQALAEALLATTTLTLAEVSERLGYSEPSA
FARAFRRWKGMSPSEYRRAA

Sequences:

>Translated_340_residues
MTAKLAHWDFVRPVATTRVLVDVGVEQGLAVGQCLGGSGVCADLLDKPDATVAAVQELRIVRNLMRLLGPDFPLGIEIGR
RYHATAYGVWGFALMSSATFGDAVSVGLRYLQLTSTFCEIRPTLRGDDATLVIDDRDLPGDVRDVLVEITVAALITLQFD
LDAANLPVKRLALKMKPPSYAGRFRTLFDATPEFGAAHNALTVDARCLDLKLPQRNALTRRRCEDECRRVLERHRRCEGW
AGRVRRQLAGDPARGPTMDVLAAELGVSPRTLRRRLANEGTDYETVVDELRQALAEALLATTTLTLAEVSERLGYSEPSA
FARAFRRWKGMSPSEYRRAA
>Mature_339_residues
TAKLAHWDFVRPVATTRVLVDVGVEQGLAVGQCLGGSGVCADLLDKPDATVAAVQELRIVRNLMRLLGPDFPLGIEIGRR
YHATAYGVWGFALMSSATFGDAVSVGLRYLQLTSTFCEIRPTLRGDDATLVIDDRDLPGDVRDVLVEITVAALITLQFDL
DAANLPVKRLALKMKPPSYAGRFRTLFDATPEFGAAHNALTVDARCLDLKLPQRNALTRRRCEDECRRVLERHRRCEGWA
GRVRRQLAGDPARGPTMDVLAAELGVSPRTLRRRLANEGTDYETVVDELRQALAEALLATTTLTLAEVSERLGYSEPSAF
ARAFRRWKGMSPSEYRRAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37522; Mature: 37390

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAKLAHWDFVRPVATTRVLVDVGVEQGLAVGQCLGGSGVCADLLDKPDATVAAVQELRI
CCCCCCCHHHHHHHHHHHHHHHHCHHHCCHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHH
VRNLMRLLGPDFPLGIEIGRRYHATAYGVWGFALMSSATFGDAVSVGLRYLQLTSTFCEI
HHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RPTLRGDDATLVIDDRDLPGDVRDVLVEITVAALITLQFDLDAANLPVKRLALKMKPPSY
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHEEECCCCCH
AGRFRTLFDATPEFGAAHNALTVDARCLDLKLPQRNALTRRRCEDECRRVLERHRRCEGW
HHHHHHHHHCCCCCCCCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCH
AGRVRRQLAGDPARGPTMDVLAAELGVSPRTLRRRLANEGTDYETVVDELRQALAEALLA
HHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
TTTLTLAEVSERLGYSEPSAFARAFRRWKGMSPSEYRRAA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure 
TAKLAHWDFVRPVATTRVLVDVGVEQGLAVGQCLGGSGVCADLLDKPDATVAAVQELRI
CCCCCCHHHHHHHHHHHHHHHHCHHHCCHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHH
VRNLMRLLGPDFPLGIEIGRRYHATAYGVWGFALMSSATFGDAVSVGLRYLQLTSTFCEI
HHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RPTLRGDDATLVIDDRDLPGDVRDVLVEITVAALITLQFDLDAANLPVKRLALKMKPPSY
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHEEECCCCCH
AGRFRTLFDATPEFGAAHNALTVDARCLDLKLPQRNALTRRRCEDECRRVLERHRRCEGW
HHHHHHHHHCCCCCCCCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCH
AGRVRRQLAGDPARGPTMDVLAAELGVSPRTLRRRLANEGTDYETVVDELRQALAEALLA
HHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
TTTLTLAEVSERLGYSEPSAFARAFRRWKGMSPSEYRRAA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036; 12368430 [H]