| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126454879
Identifier: 126454879
GI number: 126454879
Start: 2937678
End: 2938928
Strand: Reverse
Name: 126454879
Synonym: BURPS1106A_2998
Alternate gene names: NA
Gene position: 2938928-2937678 (Counterclockwise)
Preceding gene: 126453144
Following gene: 126453868
Centisome position: 73.69
GC content: 71.3
Gene sequence:
>1251_bases TTGGCGGGCGTCGCGCTTGCCGCGTTCGCGTGCGGTGCGCTCGCGCACGACGCGCAGCCGGCCGCGGGCGCATCGTCCGC GCACGCGGCGCACATGGCGATGGACGCCGCGACGGCCGGCGCCGCGCAAAAGACGCCGCTCGCGACGGGGGCCGCGTTCG ATGCGCGTCATCGGCTGTGGGTCGCGTGGGTCGAAGGGCAGCACGTCGTCGTCGCGCACTCGGACGACGCCGGGCGCACA TTGGCCCCGCCCGTGACGGTCAATGCGCTGCCCGAGCCGATCTACACGAGCGCGGAGAACCGGCCGAAGCTCGCCGCGAG CCCGGACGGGCGCGCGATCTATGTGACGTGGTCGATGCCGCTCGATGCGCCCTACACCGGGATGGTGCGCTTCTCACGCT CGCTCGACGGCGGCGCGACGTGGTCGGTGCCCGTCACCGTGCATCGCGATCGGCAGGCGATCACGCATCGTTTCGATATG CTGACGATCGATCCGCAAGGCCGCATCTTCGTCGCATGGATCGACAAGCGCGACCTCGTCGCCGCGCAGCGGGCAGGGCG TTCGTACGATGGCGCGGCGATCTACTACGCGGTGTCGACCGACGGCGGCGCGACGTTCGAGCCGGAACGCAAGGTGAGCG ATCACACGTGCGAATGCTGCCGGATCGCGATGACGGTCGATTCCGACGGCCGCGTGCAAGCCGCGTGGCGCAATGTGTTT CCGGGCCAGATCCGCGATCATGCGGTGGCGGTGCTGCACGCGTCGGCGGATCGCGCGGTCGAGCCCGTGCGCGCGACGTT CTCGAACTGGCATGTCGAGGCTTGCCCGGATCACGGGCCCGCGCTCGCGATCACGGCCGACGGCGTGCGGCATCTCGCGT GGTTCGGCGTCATCGACGGCAAGGCCGACGTGTTCTATTCGCGGCTCGATGCGCGCGGCGCGCCGCTCGGCGCGCCATTT GCGTTCGGCGACGATCCGGCGGCGCCGGACGAACAGGCGTCGCATGCGGCGCTCGTCGCGCGGCGCGACACGCTGTGGCT CGCGTGGAAGGCGTTCGACGGCGATACGATGCGCATCAGGCTGCGCCGCTCCGACGACGGCGGCGCGCACTGGAGCGCGC CGCGCACGCTCGCGTGGACGTCCGGCGCGAGCGACAACCCGCAGTTGCTGGCCGACCGAGGGCGCGTCTATCTGTCGTGG CGCACGCGCAACGACGGCTATCGGTTGATCGACGTGGAGGGGCAGCGATGA
Upstream 100 bases:
>100_bases TCGGCATCGACAACGTGACCGATCGCCGCTACTACGTGTTCCATCCTTATCCGGGCCGCACTTTTTATGGAGAGTTGAAA TGGTCGCTGTGAGGCATCGA
Downstream 100 bases:
>100_bases AGCGGGTGGCTTTCGCGCTCGCGGCGCTCGCCGTACTGGCGAATGCCGCGCCGGGCGCGGCGCAAGAAGGGCGGTTGCCG CAGCCGCTGAGGGCGACGGA
Product: hypothetical protein
Products: NA
Alternate protein names: BNR Repeat-Containing Protein; Signal Peptide Protein; BNR/Asp-Box Repeat-Containing Protein; Glycosyl Hydrolase BNR Repeat-Containing Protein; Cytochrome C Biogenesis Protein; BNR/Asp-Box Repeat Domain Protein
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MAGVALAAFACGALAHDAQPAAGASSAHAAHMAMDAATAGAAQKTPLATGAAFDARHRLWVAWVEGQHVVVAHSDDAGRT LAPPVTVNALPEPIYTSAENRPKLAASPDGRAIYVTWSMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHRFDM LTIDPQGRIFVAWIDKRDLVAAQRAGRSYDGAAIYYAVSTDGGATFEPERKVSDHTCECCRIAMTVDSDGRVQAAWRNVF PGQIRDHAVAVLHASADRAVEPVRATFSNWHVEACPDHGPALAITADGVRHLAWFGVIDGKADVFYSRLDARGAPLGAPF AFGDDPAAPDEQASHAALVARRDTLWLAWKAFDGDTMRIRLRRSDDGGAHWSAPRTLAWTSGASDNPQLLADRGRVYLSW RTRNDGYRLIDVEGQR
Sequences:
>Translated_416_residues MAGVALAAFACGALAHDAQPAAGASSAHAAHMAMDAATAGAAQKTPLATGAAFDARHRLWVAWVEGQHVVVAHSDDAGRT LAPPVTVNALPEPIYTSAENRPKLAASPDGRAIYVTWSMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHRFDM LTIDPQGRIFVAWIDKRDLVAAQRAGRSYDGAAIYYAVSTDGGATFEPERKVSDHTCECCRIAMTVDSDGRVQAAWRNVF PGQIRDHAVAVLHASADRAVEPVRATFSNWHVEACPDHGPALAITADGVRHLAWFGVIDGKADVFYSRLDARGAPLGAPF AFGDDPAAPDEQASHAALVARRDTLWLAWKAFDGDTMRIRLRRSDDGGAHWSAPRTLAWTSGASDNPQLLADRGRVYLSW RTRNDGYRLIDVEGQR >Mature_415_residues AGVALAAFACGALAHDAQPAAGASSAHAAHMAMDAATAGAAQKTPLATGAAFDARHRLWVAWVEGQHVVVAHSDDAGRTL APPVTVNALPEPIYTSAENRPKLAASPDGRAIYVTWSMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHRFDML TIDPQGRIFVAWIDKRDLVAAQRAGRSYDGAAIYYAVSTDGGATFEPERKVSDHTCECCRIAMTVDSDGRVQAAWRNVFP GQIRDHAVAVLHASADRAVEPVRATFSNWHVEACPDHGPALAITADGVRHLAWFGVIDGKADVFYSRLDARGAPLGAPFA FGDDPAAPDEQASHAALVARRDTLWLAWKAFDGDTMRIRLRRSDDGGAHWSAPRTLAWTSGASDNPQLLADRGRVYLSWR TRNDGYRLIDVEGQR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44847; Mature: 44716
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGVALAAFACGALAHDAQPAAGASSAHAAHMAMDAATAGAAQKTPLATGAAFDARHRLW CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCEEE VAWVEGQHVVVAHSDDAGRTLAPPVTVNALPEPIYTSAENRPKLAASPDGRAIYVTWSMP EEEECCCEEEEEECCCCCCEECCCEEECCCCCCCCCCCCCCCCEEECCCCCEEEEEEECC LDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHRFDMLTIDPQGRIFVAWIDKRDLV CCCCCCCEEEEECCCCCCCEEEEEEEEECCCHHHHEEEEEEEECCCCCEEEEEECCCHHH AAQRAGRSYDGAAIYYAVSTDGGATFEPERKVSDHTCECCRIAMTVDSDGRVQAAWRNVF HHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEHHHCCC PGQIRDHAVAVLHASADRAVEPVRATFSNWHVEACPDHGPALAITADGVRHLAWFGVIDG CCCCCCCEEEEEECCCCCCHHHHHHHHCCCEEEECCCCCCEEEEECCCCEEEEEEEEECC KADVFYSRLDARGAPLGAPFAFGDDPAAPDEQASHAALVARRDTLWLAWKAFDGDTMRIR CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCEEEEE LRRSDDGGAHWSAPRTLAWTSGASDNPQLLADRGRVYLSWRTRNDGYRLIDVEGQR EEECCCCCCCCCCCCEEEECCCCCCCCCEEECCCEEEEEEEECCCCEEEEEECCCC >Mature Secondary Structure AGVALAAFACGALAHDAQPAAGASSAHAAHMAMDAATAGAAQKTPLATGAAFDARHRLW CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCEEE VAWVEGQHVVVAHSDDAGRTLAPPVTVNALPEPIYTSAENRPKLAASPDGRAIYVTWSMP EEEECCCEEEEEECCCCCCEECCCEEECCCCCCCCCCCCCCCCEEECCCCCEEEEEEECC LDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHRFDMLTIDPQGRIFVAWIDKRDLV CCCCCCCEEEEECCCCCCCEEEEEEEEECCCHHHHEEEEEEEECCCCCEEEEEECCCHHH AAQRAGRSYDGAAIYYAVSTDGGATFEPERKVSDHTCECCRIAMTVDSDGRVQAAWRNVF HHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEHHHCCC PGQIRDHAVAVLHASADRAVEPVRATFSNWHVEACPDHGPALAITADGVRHLAWFGVIDG CCCCCCCEEEEEECCCCCCHHHHHHHHCCCEEEECCCCCCEEEEECCCCEEEEEEEEECC KADVFYSRLDARGAPLGAPFAFGDDPAAPDEQASHAALVARRDTLWLAWKAFDGDTMRIR CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCEEEEE LRRSDDGGAHWSAPRTLAWTSGASDNPQLLADRGRVYLSWRTRNDGYRLIDVEGQR EEECCCCCCCCCCCCEEEECCCCCCCCCEEECCCEEEEEEEECCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA